simer.Data.SELIND: Selection index construction
In simer: Data Simulation for Life Science and Breeding

simer.Data.SELIND

R Documentation

Selection index construction

Description

The function of General Selection Index.

Usage

simer.Data.SELIND(jsonList = NULL, hiblupPath = "", ncpus = 10, verbose = TRUE)

Arguments

`jsonList`	the list of selection index construction parameters.
`hiblupPath`	the path of HIBLUP software.
`ncpus`	the number of threads used, if NULL, (logical core number - 1) is automatically used.
`verbose`	whether to print detail.

Details

Build date: Aug 26, 2021 Last update: Apr 28, 2022

Value

the function returns a list containing

$genotype: the path of genotype data.
$pedigree: the filename of pedigree data.
$selection_index: the selection index for all traits.
$breeding_value_index: the breeding value index for all traits.
$quality_control_plan: a list of parameters for data quality control.
$breeding_plan: a list of parameters for genetic evaluation.

Author(s)

Dong Yin

References

Y. S. Chen, Z. L. Sheng (1988) The Theory of General Selection Index. Genetic Report, 15(3): P185-P190

Examples

# Read JSON file
jsonFile <- system.file("extdata", "04breeding_plan", "plan1.json", package = "simer")
jsonList <- jsonlite::fromJSON(txt = jsonFile, simplifyVector = FALSE)

## Not run: 
# It needs "hiblup" software
jsonList <- simer.Data.SELIND(jsonList = jsonList)

## End(Not run)

simer documentation built on April 3, 2025, 9:24 p.m.