draw: Draw parameters from a 'SimSem' object.
In simsem: SIMulated Structural Equation Modeling
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
This function draws parameters from a SimSem template, for debugging or other use. Used internally to create data. Data can be created in one step from a SimSem object using generate.
Usage
1
2
3
Arguments
model
A SimSem object.
maxDraw
Integer specifying the maximum number of attempts to draw a valid set of parameters (no negative error variance, standardized coefficients over 1).
misfitBounds
Vector that contains upper and lower bounds of the misfit measure. Sets of parameters drawn that are not within these bounds are rejected.
averageNumMisspec
If TRUE, the provided fit will be divided by the number of misspecified parameters.
optMisfit
Character vector of either "min" or "max" indicating either maximum or minimum optimized misfit. If not null, the set of parameters out of the number of draws in "optDraws" that has either the maximum or minimum misfit of the given misfit type will be returned.
optDraws
Number of parameter sets to draw if optMisfit is not null. The set of parameters with the maximum or minimum misfit will be returned.
misfitType
Character vector indicating the fit measure used to assess the misfit of a set of parameters. Can be "f0", "rmsea", "srmr", or "all".
createOrder
The order of 1) applying equality/inequality constraints, 2) applying misspecification, and 3) fill unspecified parameters (e.g., residual variances when total variances are specified). The specification of this argument is a vector of different orders of 1 (constraint), 2 (misspecification), and 3 (filling parameters). For example, c(1, 2, 3) is to apply constraints first, then add the misspecification, and finally fill all parameters.
covData
A data.frame containing covariate data, which can have any distributions. This argument is required when users specify GA or KA matrices in the model template (SimSem).
Value
Nested list of drawn parameters in the form [[Group]][[param,misspec,misOnly]][[SimMatrix]]. E.g. The LY parameter matrix of the first group would be indexed as obj[[1]]$param$LY.
The values in $param are the raw parameter values with no misspecification. The values in $misspec are raw parameter values + misspecification. The values in $misOnly are only the misspecification values.
Author(s)
Sunthud Pornprasertmanit (psunthud@gmail.com), Patrick Miller (University of Notre Dame; pmille13@nd.edu)
See Also
createData To generate random data using a set of parameters from draw
Examples
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loading <- matrix(0, 6, 2)
loading[1:3, 1] <- NA
loading[4:6, 2] <- NA
LY <- bind(loading, 0.7)
latent.cor <- matrix(NA, 2, 2)
diag(latent.cor) <- 1
RPS <- binds(latent.cor, 0.5)
RTE <- binds(diag(6))
VY <- bind(rep(NA,6),2)
CFA.Model <- model(LY = LY, RPS = RPS, RTE = RTE, modelType = "CFA")
# Draw a parameter set for data generation.
param <- draw(CFA.Model)
# Example of Multiple Group Model with Weak Invariance
loading.in <- matrix(0, 6, 2)
loading.in[1:3, 1] <- c("load1", "load2", "load3")
loading.in[4:6, 2] <- c("load4", "load5", "load6")
mis <- matrix(0,6,2)
mis[loading.in == "0"] <- "runif(1, -0.1, 0.1)"
LY.in <- bind(loading.in, "runif(1, 0.7, 0.8)", mis)
latent.cor <- matrix(NA, 2, 2)
diag(latent.cor) <- 1
RPS <- binds(latent.cor, 0.5)
RTE <- binds(diag(6))
VTE <- bind(rep(NA, 6), 0.51)
VPS1 <- bind(rep(1, 2))
VPS2 <- bind(rep(NA, 2), c(1.1, 1.2))
# Inequality constraint
script <- "
sth := load1 + load2 + load3
load4 == (load5 + load6) / 2
load4 > 0
load5 > 0
sth2 := load1 - load2
"
# Model Template
weak <- model(LY = LY.in, RPS = RPS, VPS=list(VPS1, VPS2), RTE = RTE, VTE=VTE, ngroups=2,
modelType = "CFA", con=script)
# Constraint --> Misspecification --> Fill Parameters
draw(weak, createOrder=c(1, 2, 3))
# Constraint --> Fill Parameters --> Misspecification
draw(weak, createOrder=c(1, 3, 2))
# Misspecification --> Constraint --> Fill Parameters
draw(weak, createOrder=c(2, 1, 3))
# Misspecification --> Fill Parameters --> Constraint
draw(weak, createOrder=c(2, 3, 1))
# Fill Parameters --> Constraint --> Misspecification
draw(weak, createOrder=c(3, 1, 2))
# Fill Parameters --> Misspecification --> Constraint
draw(weak, createOrder=c(3, 2, 1))
Example output
Loading required package: lavaan
This is lavaan 0.6-3
lavaan is BETA software! Please report any bugs.
#################################################################
This is simsem 0.5-14
simsem is BETA software! Please report any bugs.
simsem was first developed at the University of Kansas Center for
Research Methods and Data Analysis, under NSF Grant 1053160.
#################################################################
Attaching package: 'simsem'
The following object is masked from 'package:lavaan':
inspect
[[1]]
[[1]]$param
[[1]]$param$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$param$BE
NULL
[[1]]$param$AL
[1] 0 0
[[1]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$param$LY
[,1] [,2]
[1,] 0.7241935 0.0000000
[2,] 0.7405013 0.0000000
[3,] 0.7721696 0.0000000
[4,] 0.0000000 0.7688194
[5,] 0.0000000 0.7780804
[6,] 0.0000000 0.7595584
[[1]]$param$TY
[1] 0 0 0 0 0 0
[[1]]$param$GA
NULL
[[1]]$param$KA
NULL
[[1]]$misspec
[[1]]$misspec$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$misspec$BE
NULL
[[1]]$misspec$AL
[1] 0 0
[[1]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$misspec$LY
[,1] [,2]
[1,] 0.72419351 -0.05275539
[2,] 0.74050127 -0.08833830
[3,] 0.77216964 0.08476384
[4,] 0.01407010 0.76881943
[5,] 0.03938613 0.77808042
[6,] -0.07272192 0.75955843
[[1]]$misspec$TY
[1] 0 0 0 0 0 0
[[1]]$misspec$GA
NULL
[[1]]$misspec$KA
NULL
[[1]]$misOnly
[[1]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 -0.05275539
[2,] 0.00000000 -0.08833830
[3,] 0.00000000 0.08476384
[4,] 0.01407010 0.00000000
[5,] 0.03938613 0.00000000
[6,] -0.07272192 0.00000000
[[1]]$misOnly$PS
NULL
[[1]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[1]]$misOnly$TE
NULL
[[1]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[1]]$misOnly$BE
NULL
[[1]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[1]]$misOnly$VY
NULL
[[1]]$misOnly$VPS
[1] 0 0
[[1]]$misOnly$VE
[1] 0 0
[[1]]$misOnly$TY
[1] 0 0 0 0 0 0
[[1]]$misOnly$AL
[1] 0 0
[[1]]$misOnly$MY
NULL
[[1]]$misOnly$ME
[1] 0 0
[[1]]$misOnly$KA
NULL
[[1]]$misOnly$GA
NULL
[[2]]
[[2]]$param
[[2]]$param$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$param$BE
NULL
[[2]]$param$AL
[1] 0 0
[[2]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$param$LY
[,1] [,2]
[1,] 0.7241935 0.0000000
[2,] 0.7405013 0.0000000
[3,] 0.7721696 0.0000000
[4,] 0.0000000 0.7688194
[5,] 0.0000000 0.7780804
[6,] 0.0000000 0.7595584
[[2]]$param$TY
[1] 0 0 0 0 0 0
[[2]]$param$GA
NULL
[[2]]$param$KA
NULL
[[2]]$misspec
[[2]]$misspec$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$misspec$BE
NULL
[[2]]$misspec$AL
[1] 0 0
[[2]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$misspec$LY
[,1] [,2]
[1,] 0.72419351 0.04292407
[2,] 0.74050127 -0.00326267
[3,] 0.77216964 0.09515629
[4,] 0.04201825 0.76881943
[5,] 0.01885561 0.77808042
[6,] 0.06510299 0.75955843
[[2]]$misspec$TY
[1] 0 0 0 0 0 0
[[2]]$misspec$GA
NULL
[[2]]$misspec$KA
NULL
[[2]]$misOnly
[[2]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 0.04292407
[2,] 0.00000000 -0.00326267
[3,] 0.00000000 0.09515629
[4,] 0.04201825 0.00000000
[5,] 0.01885561 0.00000000
[6,] 0.06510299 0.00000000
[[2]]$misOnly$PS
NULL
[[2]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[2]]$misOnly$TE
NULL
[[2]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[2]]$misOnly$BE
NULL
[[2]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[2]]$misOnly$VY
NULL
[[2]]$misOnly$VPS
[1] 0 0
[[2]]$misOnly$VE
[1] 0 0
[[2]]$misOnly$TY
[1] 0 0 0 0 0 0
[[2]]$misOnly$AL
[1] 0 0
[[2]]$misOnly$MY
NULL
[[2]]$misOnly$ME
[1] 0 0
[[2]]$misOnly$KA
NULL
[[2]]$misOnly$GA
NULL
[[1]]
[[1]]$param
[[1]]$param$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$param$BE
NULL
[[1]]$param$AL
[1] 0 0
[[1]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$param$LY
[,1] [,2]
[1,] 0.7361737 0.0000000
[2,] 0.7536268 0.0000000
[3,] 0.7234897 0.0000000
[4,] 0.0000000 0.7239286
[5,] 0.0000000 0.7349521
[6,] 0.0000000 0.7129052
[[1]]$param$TY
[1] 0 0 0 0 0 0
[[1]]$param$GA
NULL
[[1]]$param$KA
NULL
[[1]]$misspec
[[1]]$misspec$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$misspec$BE
NULL
[[1]]$misspec$AL
[1] 0 0
[[1]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$misspec$LY
[,1] [,2]
[1,] 0.73617370 -0.004289149
[2,] 0.75362684 0.036223525
[3,] 0.72348969 0.021511561
[4,] -0.08716595 0.723928637
[5,] 0.09870758 0.734952100
[6,] -0.05957009 0.712905175
[[1]]$misspec$TY
[1] 0 0 0 0 0 0
[[1]]$misspec$GA
NULL
[[1]]$misspec$KA
NULL
[[1]]$misOnly
[[1]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 -0.004289149
[2,] 0.00000000 0.036223525
[3,] 0.00000000 0.021511561
[4,] -0.08716595 0.000000000
[5,] 0.09870758 0.000000000
[6,] -0.05957009 0.000000000
[[1]]$misOnly$PS
NULL
[[1]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[1]]$misOnly$TE
NULL
[[1]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[1]]$misOnly$BE
NULL
[[1]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[1]]$misOnly$VY
NULL
[[1]]$misOnly$VPS
[1] 0 0
[[1]]$misOnly$VE
[1] 0 0
[[1]]$misOnly$TY
[1] 0 0 0 0 0 0
[[1]]$misOnly$AL
[1] 0 0
[[1]]$misOnly$MY
NULL
[[1]]$misOnly$ME
[1] 0 0
[[1]]$misOnly$KA
NULL
[[1]]$misOnly$GA
NULL
[[2]]
[[2]]$param
[[2]]$param$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$param$BE
NULL
[[2]]$param$AL
[1] 0 0
[[2]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$param$LY
[,1] [,2]
[1,] 0.7361737 0.0000000
[2,] 0.7536268 0.0000000
[3,] 0.7234897 0.0000000
[4,] 0.0000000 0.7239286
[5,] 0.0000000 0.7349521
[6,] 0.0000000 0.7129052
[[2]]$param$TY
[1] 0 0 0 0 0 0
[[2]]$param$GA
NULL
[[2]]$param$KA
NULL
[[2]]$misspec
[[2]]$misspec$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$misspec$BE
NULL
[[2]]$misspec$AL
[1] 0 0
[[2]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$misspec$LY
[,1] [,2]
[1,] 0.73617370 0.04015608
[2,] 0.75362684 0.01680643
[3,] 0.72348969 -0.03618823
[4,] -0.03417573 0.72392864
[5,] 0.07346223 0.73495210
[6,] -0.08308473 0.71290517
[[2]]$misspec$TY
[1] 0 0 0 0 0 0
[[2]]$misspec$GA
NULL
[[2]]$misspec$KA
NULL
[[2]]$misOnly
[[2]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 0.04015608
[2,] 0.00000000 0.01680643
[3,] 0.00000000 -0.03618823
[4,] -0.03417573 0.00000000
[5,] 0.07346223 0.00000000
[6,] -0.08308473 0.00000000
[[2]]$misOnly$PS
NULL
[[2]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[2]]$misOnly$TE
NULL
[[2]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[2]]$misOnly$BE
NULL
[[2]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[2]]$misOnly$VY
NULL
[[2]]$misOnly$VPS
[1] 0 0
[[2]]$misOnly$VE
[1] 0 0
[[2]]$misOnly$TY
[1] 0 0 0 0 0 0
[[2]]$misOnly$AL
[1] 0 0
[[2]]$misOnly$MY
NULL
[[2]]$misOnly$ME
[1] 0 0
[[2]]$misOnly$KA
NULL
[[2]]$misOnly$GA
NULL
[[1]]
[[1]]$param
[[1]]$param$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$param$BE
NULL
[[1]]$param$AL
[1] 0 0
[[1]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$param$LY
[,1] [,2]
[1,] 0.7211230 0.0000000
[2,] 0.7903581 0.0000000
[3,] 0.7194861 0.0000000
[4,] 0.0000000 0.7412148
[5,] 0.0000000 0.7420583
[6,] 0.0000000 0.7403714
[[1]]$param$TY
[1] 0 0 0 0 0 0
[[1]]$param$GA
NULL
[[1]]$param$KA
NULL
[[1]]$misspec
[[1]]$misspec$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$misspec$BE
NULL
[[1]]$misspec$AL
[1] 0 0
[[1]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$misspec$LY
[,1] [,2]
[1,] 0.72112299 0.06344156
[2,] 0.79035812 0.03743867
[3,] 0.71948613 0.01543237
[4,] 0.07021005 0.74121481
[5,] -0.01243553 0.74205826
[6,] 0.09959251 0.74037137
[[1]]$misspec$TY
[1] 0 0 0 0 0 0
[[1]]$misspec$GA
NULL
[[1]]$misspec$KA
NULL
[[1]]$misOnly
[[1]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 0.06344156
[2,] 0.00000000 0.03743867
[3,] 0.00000000 0.01543237
[4,] 0.07021005 0.00000000
[5,] -0.01243553 0.00000000
[6,] 0.09959251 0.00000000
[[1]]$misOnly$PS
NULL
[[1]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[1]]$misOnly$TE
NULL
[[1]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[1]]$misOnly$BE
NULL
[[1]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[1]]$misOnly$VY
NULL
[[1]]$misOnly$VPS
[1] 0 0
[[1]]$misOnly$VE
[1] 0 0
[[1]]$misOnly$TY
[1] 0 0 0 0 0 0
[[1]]$misOnly$AL
[1] 0 0
[[1]]$misOnly$MY
NULL
[[1]]$misOnly$ME
[1] 0 0
[[1]]$misOnly$KA
NULL
[[1]]$misOnly$GA
NULL
[[2]]
[[2]]$param
[[2]]$param$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$param$BE
NULL
[[2]]$param$AL
[1] 0 0
[[2]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$param$LY
[,1] [,2]
[1,] 0.7211230 0.0000000
[2,] 0.7903581 0.0000000
[3,] 0.7194861 0.0000000
[4,] 0.0000000 0.7412148
[5,] 0.0000000 0.7420583
[6,] 0.0000000 0.7403714
[[2]]$param$TY
[1] 0 0 0 0 0 0
[[2]]$param$GA
NULL
[[2]]$param$KA
NULL
[[2]]$misspec
[[2]]$misspec$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$misspec$BE
NULL
[[2]]$misspec$AL
[1] 0 0
[[2]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$misspec$LY
[,1] [,2]
[1,] 0.72112299 -0.08539157
[2,] 0.79035812 0.09543299
[3,] 0.71948613 0.07954384
[4,] 0.03368679 0.74121481
[5,] -0.04465677 0.74205826
[6,] -0.07235942 0.74037137
[[2]]$misspec$TY
[1] 0 0 0 0 0 0
[[2]]$misspec$GA
NULL
[[2]]$misspec$KA
NULL
[[2]]$misOnly
[[2]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 -0.08539157
[2,] 0.00000000 0.09543299
[3,] 0.00000000 0.07954384
[4,] 0.03368679 0.00000000
[5,] -0.04465677 0.00000000
[6,] -0.07235942 0.00000000
[[2]]$misOnly$PS
NULL
[[2]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[2]]$misOnly$TE
NULL
[[2]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[2]]$misOnly$BE
NULL
[[2]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[2]]$misOnly$VY
NULL
[[2]]$misOnly$VPS
[1] 0 0
[[2]]$misOnly$VE
[1] 0 0
[[2]]$misOnly$TY
[1] 0 0 0 0 0 0
[[2]]$misOnly$AL
[1] 0 0
[[2]]$misOnly$MY
NULL
[[2]]$misOnly$ME
[1] 0 0
[[2]]$misOnly$KA
NULL
[[2]]$misOnly$GA
NULL
[[1]]
[[1]]$param
[[1]]$param$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$param$BE
NULL
[[1]]$param$AL
[1] 0 0
[[1]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$param$LY
[,1] [,2]
[1,] 0.7482903 0.0000000
[2,] 0.7583208 0.0000000
[3,] 0.7437963 0.0000000
[4,] 0.0000000 0.7700825
[5,] 0.0000000 0.7840322
[6,] 0.0000000 0.7561328
[[1]]$param$TY
[1] 0 0 0 0 0 0
[[1]]$param$GA
NULL
[[1]]$param$KA
NULL
[[1]]$misspec
[[1]]$misspec$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$misspec$BE
NULL
[[1]]$misspec$AL
[1] 0 0
[[1]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$misspec$LY
[,1] [,2]
[1,] 0.748290304 0.07765994
[2,] 0.758320777 -0.07698941
[3,] 0.743796311 0.03852196
[4,] -0.049575834 0.77008246
[5,] -0.007390154 0.78403217
[6,] -0.062777875 0.75613276
[[1]]$misspec$TY
[1] 0 0 0 0 0 0
[[1]]$misspec$GA
NULL
[[1]]$misspec$KA
NULL
[[1]]$misOnly
[[1]]$misOnly$LY
[,1] [,2]
[1,] 0.000000000 0.07765994
[2,] 0.000000000 -0.07698941
[3,] 0.000000000 0.03852196
[4,] -0.049575834 0.00000000
[5,] -0.007390154 0.00000000
[6,] -0.062777875 0.00000000
[[1]]$misOnly$PS
NULL
[[1]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[1]]$misOnly$TE
NULL
[[1]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[1]]$misOnly$BE
NULL
[[1]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[1]]$misOnly$VY
NULL
[[1]]$misOnly$VPS
[1] 0 0
[[1]]$misOnly$VE
[1] 0 0
[[1]]$misOnly$TY
[1] 0 0 0 0 0 0
[[1]]$misOnly$AL
[1] 0 0
[[1]]$misOnly$MY
NULL
[[1]]$misOnly$ME
[1] 0 0
[[1]]$misOnly$KA
NULL
[[1]]$misOnly$GA
NULL
[[2]]
[[2]]$param
[[2]]$param$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$param$BE
NULL
[[2]]$param$AL
[1] 0 0
[[2]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$param$LY
[,1] [,2]
[1,] 0.7482903 0.0000000
[2,] 0.7583208 0.0000000
[3,] 0.7437963 0.0000000
[4,] 0.0000000 0.7700825
[5,] 0.0000000 0.7840322
[6,] 0.0000000 0.7561328
[[2]]$param$TY
[1] 0 0 0 0 0 0
[[2]]$param$GA
NULL
[[2]]$param$KA
NULL
[[2]]$misspec
[[2]]$misspec$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$misspec$BE
NULL
[[2]]$misspec$AL
[1] 0 0
[[2]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$misspec$LY
[,1] [,2]
[1,] 0.74829030 -0.07157370
[2,] 0.75832078 -0.07827016
[3,] 0.74379631 0.01977253
[4,] 0.01437080 0.77008246
[5,] -0.03722602 0.78403217
[6,] 0.02902977 0.75613276
[[2]]$misspec$TY
[1] 0 0 0 0 0 0
[[2]]$misspec$GA
NULL
[[2]]$misspec$KA
NULL
[[2]]$misOnly
[[2]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 -0.07157370
[2,] 0.00000000 -0.07827016
[3,] 0.00000000 0.01977253
[4,] 0.01437080 0.00000000
[5,] -0.03722602 0.00000000
[6,] 0.02902977 0.00000000
[[2]]$misOnly$PS
NULL
[[2]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[2]]$misOnly$TE
NULL
[[2]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[2]]$misOnly$BE
NULL
[[2]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[2]]$misOnly$VY
NULL
[[2]]$misOnly$VPS
[1] 0 0
[[2]]$misOnly$VE
[1] 0 0
[[2]]$misOnly$TY
[1] 0 0 0 0 0 0
[[2]]$misOnly$AL
[1] 0 0
[[2]]$misOnly$MY
NULL
[[2]]$misOnly$ME
[1] 0 0
[[2]]$misOnly$KA
NULL
[[2]]$misOnly$GA
NULL
[[1]]
[[1]]$param
[[1]]$param$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$param$BE
NULL
[[1]]$param$AL
[1] 0 0
[[1]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$param$LY
[,1] [,2]
[1,] 0.7115956 0.0000000
[2,] 0.7476529 0.0000000
[3,] 0.7250151 0.0000000
[4,] 0.0000000 0.7648150
[5,] 0.0000000 0.7949736
[6,] 0.0000000 0.7346564
[[1]]$param$TY
[1] 0 0 0 0 0 0
[[1]]$param$GA
NULL
[[1]]$param$KA
NULL
[[1]]$misspec
[[1]]$misspec$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$misspec$BE
NULL
[[1]]$misspec$AL
[1] 0 0
[[1]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$misspec$LY
[,1] [,2]
[1,] 0.71159558 -0.046409169
[2,] 0.74765291 0.005628134
[3,] 0.72501509 -0.017911026
[4,] 0.03290256 0.764815012
[5,] 0.01626334 0.794973637
[6,] 0.04761273 0.734656388
[[1]]$misspec$TY
[1] 0 0 0 0 0 0
[[1]]$misspec$GA
NULL
[[1]]$misspec$KA
NULL
[[1]]$misOnly
[[1]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 -0.046409169
[2,] 0.00000000 0.005628134
[3,] 0.00000000 -0.017911026
[4,] 0.03290256 0.000000000
[5,] 0.01626334 0.000000000
[6,] 0.04761273 0.000000000
[[1]]$misOnly$PS
NULL
[[1]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[1]]$misOnly$TE
NULL
[[1]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[1]]$misOnly$BE
NULL
[[1]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[1]]$misOnly$VY
NULL
[[1]]$misOnly$VPS
[1] 0 0
[[1]]$misOnly$VE
[1] 0 0
[[1]]$misOnly$TY
[1] 0 0 0 0 0 0
[[1]]$misOnly$AL
[1] 0 0
[[1]]$misOnly$MY
NULL
[[1]]$misOnly$ME
[1] 0 0
[[1]]$misOnly$KA
NULL
[[1]]$misOnly$GA
NULL
[[2]]
[[2]]$param
[[2]]$param$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$param$BE
NULL
[[2]]$param$AL
[1] 0 0
[[2]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$param$LY
[,1] [,2]
[1,] 0.7115956 0.0000000
[2,] 0.7476529 0.0000000
[3,] 0.7250151 0.0000000
[4,] 0.0000000 0.7648150
[5,] 0.0000000 0.7949736
[6,] 0.0000000 0.7346564
[[2]]$param$TY
[1] 0 0 0 0 0 0
[[2]]$param$GA
NULL
[[2]]$param$KA
NULL
[[2]]$misspec
[[2]]$misspec$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$misspec$BE
NULL
[[2]]$misspec$AL
[1] 0 0
[[2]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$misspec$LY
[,1] [,2]
[1,] 0.71159558 -0.003394048
[2,] 0.74765291 -0.072317280
[3,] 0.72501509 0.048608383
[4,] -0.03478136 0.764815012
[5,] 0.07369535 0.794973637
[6,] -0.03800015 0.734656388
[[2]]$misspec$TY
[1] 0 0 0 0 0 0
[[2]]$misspec$GA
NULL
[[2]]$misspec$KA
NULL
[[2]]$misOnly
[[2]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 -0.003394048
[2,] 0.00000000 -0.072317280
[3,] 0.00000000 0.048608383
[4,] -0.03478136 0.000000000
[5,] 0.07369535 0.000000000
[6,] -0.03800015 0.000000000
[[2]]$misOnly$PS
NULL
[[2]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[2]]$misOnly$TE
NULL
[[2]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[2]]$misOnly$BE
NULL
[[2]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[2]]$misOnly$VY
NULL
[[2]]$misOnly$VPS
[1] 0 0
[[2]]$misOnly$VE
[1] 0 0
[[2]]$misOnly$TY
[1] 0 0 0 0 0 0
[[2]]$misOnly$AL
[1] 0 0
[[2]]$misOnly$MY
NULL
[[2]]$misOnly$ME
[1] 0 0
[[2]]$misOnly$KA
NULL
[[2]]$misOnly$GA
NULL
[[1]]
[[1]]$param
[[1]]$param$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$param$BE
NULL
[[1]]$param$AL
[1] 0 0
[[1]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$param$LY
[,1] [,2]
[1,] 0.7894022 0.0000000
[2,] 0.7528532 0.0000000
[3,] 0.7999546 0.0000000
[4,] 0.0000000 0.7287025
[5,] 0.0000000 0.7012566
[6,] 0.0000000 0.7561484
[[1]]$param$TY
[1] 0 0 0 0 0 0
[[1]]$param$GA
NULL
[[1]]$param$KA
NULL
[[1]]$misspec
[[1]]$misspec$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$misspec$BE
NULL
[[1]]$misspec$AL
[1] 0 0
[[1]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$misspec$LY
[,1] [,2]
[1,] 0.78940217 0.05493237
[2,] 0.75285320 -0.09493972
[3,] 0.79995456 -0.09030231
[4,] 0.03162615 0.72870250
[5,] -0.07186846 0.70125664
[6,] -0.08496611 0.75614835
[[1]]$misspec$TY
[1] 0 0 0 0 0 0
[[1]]$misspec$GA
NULL
[[1]]$misspec$KA
NULL
[[1]]$misOnly
[[1]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 0.05493237
[2,] 0.00000000 -0.09493972
[3,] 0.00000000 -0.09030231
[4,] 0.03162615 0.00000000
[5,] -0.07186846 0.00000000
[6,] -0.08496611 0.00000000
[[1]]$misOnly$PS
NULL
[[1]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[1]]$misOnly$TE
NULL
[[1]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[1]]$misOnly$BE
NULL
[[1]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[1]]$misOnly$VY
NULL
[[1]]$misOnly$VPS
[1] 0 0
[[1]]$misOnly$VE
[1] 0 0
[[1]]$misOnly$TY
[1] 0 0 0 0 0 0
[[1]]$misOnly$AL
[1] 0 0
[[1]]$misOnly$MY
NULL
[[1]]$misOnly$ME
[1] 0 0
[[1]]$misOnly$KA
NULL
[[1]]$misOnly$GA
NULL
[[2]]
[[2]]$param
[[2]]$param$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$param$BE
NULL
[[2]]$param$AL
[1] 0 0
[[2]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$param$LY
[,1] [,2]
[1,] 0.7894022 0.0000000
[2,] 0.7528532 0.0000000
[3,] 0.7999546 0.0000000
[4,] 0.0000000 0.7287025
[5,] 0.0000000 0.7012566
[6,] 0.0000000 0.7561484
[[2]]$param$TY
[1] 0 0 0 0 0 0
[[2]]$param$GA
NULL
[[2]]$param$KA
NULL
[[2]]$misspec
[[2]]$misspec$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$misspec$BE
NULL
[[2]]$misspec$AL
[1] 0 0
[[2]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$misspec$LY
[,1] [,2]
[1,] 0.78940217 0.06644917
[2,] 0.75285320 -0.03118475
[3,] 0.79995456 0.09330570
[4,] 0.07645396 0.72870250
[5,] 0.02451202 0.70125664
[6,] 0.07190931 0.75614835
[[2]]$misspec$TY
[1] 0 0 0 0 0 0
[[2]]$misspec$GA
NULL
[[2]]$misspec$KA
NULL
[[2]]$misOnly
[[2]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 0.06644917
[2,] 0.00000000 -0.03118475
[3,] 0.00000000 0.09330570
[4,] 0.07645396 0.00000000
[5,] 0.02451202 0.00000000
[6,] 0.07190931 0.00000000
[[2]]$misOnly$PS
NULL
[[2]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[2]]$misOnly$TE
NULL
[[2]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[2]]$misOnly$BE
NULL
[[2]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[2]]$misOnly$VY
NULL
[[2]]$misOnly$VPS
[1] 0 0
[[2]]$misOnly$VE
[1] 0 0
[[2]]$misOnly$TY
[1] 0 0 0 0 0 0
[[2]]$misOnly$AL
[1] 0 0
[[2]]$misOnly$MY
NULL
[[2]]$misOnly$ME
[1] 0 0
[[2]]$misOnly$KA
NULL
[[2]]$misOnly$GA
NULL
simsem documentation built on March 29, 2021, 1:07 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
Description
This function draws parameters from a SimSem template, for debugging or other use. Used internally to create data. Data can be created in one step from a SimSem object using generate.
Usage
1 2 3 |
Arguments
model |
A |
maxDraw |
Integer specifying the maximum number of attempts to draw a valid set of parameters (no negative error variance, standardized coefficients over 1). |
misfitBounds |
Vector that contains upper and lower bounds of the misfit measure. Sets of parameters drawn that are not within these bounds are rejected. |
averageNumMisspec |
If |
optMisfit |
Character vector of either "min" or "max" indicating either maximum or minimum optimized misfit. If not null, the set of parameters out of the number of draws in "optDraws" that has either the maximum or minimum misfit of the given misfit type will be returned. |
optDraws |
Number of parameter sets to draw if optMisfit is not null. The set of parameters with the maximum or minimum misfit will be returned. |
misfitType |
Character vector indicating the fit measure used to assess the misfit of a set of parameters. Can be "f0", "rmsea", "srmr", or "all". |
createOrder |
The order of 1) applying equality/inequality constraints, 2) applying misspecification, and 3) fill unspecified parameters (e.g., residual variances when total variances are specified). The specification of this argument is a vector of different orders of 1 (constraint), 2 (misspecification), and 3 (filling parameters). For example, |
covData |
A data.frame containing covariate data, which can have any distributions. This argument is required when users specify |
Value
Nested list of drawn parameters in the form [[Group]][[param,misspec,misOnly]][[SimMatrix]]. E.g. The LY parameter matrix of the first group would be indexed as obj[[1]]$param$LY.
The values in $param are the raw parameter values with no misspecification. The values in $misspec are raw parameter values + misspecification. The values in $misOnly are only the misspecification values.
Author(s)
Sunthud Pornprasertmanit (psunthud@gmail.com), Patrick Miller (University of Notre Dame; pmille13@nd.edu)
See Also
createData To generate random data using a set of parameters from draw
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 | loading <- matrix(0, 6, 2)
loading[1:3, 1] <- NA
loading[4:6, 2] <- NA
LY <- bind(loading, 0.7)
latent.cor <- matrix(NA, 2, 2)
diag(latent.cor) <- 1
RPS <- binds(latent.cor, 0.5)
RTE <- binds(diag(6))
VY <- bind(rep(NA,6),2)
CFA.Model <- model(LY = LY, RPS = RPS, RTE = RTE, modelType = "CFA")
# Draw a parameter set for data generation.
param <- draw(CFA.Model)
# Example of Multiple Group Model with Weak Invariance
loading.in <- matrix(0, 6, 2)
loading.in[1:3, 1] <- c("load1", "load2", "load3")
loading.in[4:6, 2] <- c("load4", "load5", "load6")
mis <- matrix(0,6,2)
mis[loading.in == "0"] <- "runif(1, -0.1, 0.1)"
LY.in <- bind(loading.in, "runif(1, 0.7, 0.8)", mis)
latent.cor <- matrix(NA, 2, 2)
diag(latent.cor) <- 1
RPS <- binds(latent.cor, 0.5)
RTE <- binds(diag(6))
VTE <- bind(rep(NA, 6), 0.51)
VPS1 <- bind(rep(1, 2))
VPS2 <- bind(rep(NA, 2), c(1.1, 1.2))
# Inequality constraint
script <- "
sth := load1 + load2 + load3
load4 == (load5 + load6) / 2
load4 > 0
load5 > 0
sth2 := load1 - load2
"
# Model Template
weak <- model(LY = LY.in, RPS = RPS, VPS=list(VPS1, VPS2), RTE = RTE, VTE=VTE, ngroups=2,
modelType = "CFA", con=script)
# Constraint --> Misspecification --> Fill Parameters
draw(weak, createOrder=c(1, 2, 3))
# Constraint --> Fill Parameters --> Misspecification
draw(weak, createOrder=c(1, 3, 2))
# Misspecification --> Constraint --> Fill Parameters
draw(weak, createOrder=c(2, 1, 3))
# Misspecification --> Fill Parameters --> Constraint
draw(weak, createOrder=c(2, 3, 1))
# Fill Parameters --> Constraint --> Misspecification
draw(weak, createOrder=c(3, 1, 2))
# Fill Parameters --> Misspecification --> Constraint
draw(weak, createOrder=c(3, 2, 1))
|
Example output
Loading required package: lavaan
This is lavaan 0.6-3
lavaan is BETA software! Please report any bugs.
#################################################################
This is simsem 0.5-14
simsem is BETA software! Please report any bugs.
simsem was first developed at the University of Kansas Center for
Research Methods and Data Analysis, under NSF Grant 1053160.
#################################################################
Attaching package: 'simsem'
The following object is masked from 'package:lavaan':
inspect
[[1]]
[[1]]$param
[[1]]$param$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$param$BE
NULL
[[1]]$param$AL
[1] 0 0
[[1]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$param$LY
[,1] [,2]
[1,] 0.7241935 0.0000000
[2,] 0.7405013 0.0000000
[3,] 0.7721696 0.0000000
[4,] 0.0000000 0.7688194
[5,] 0.0000000 0.7780804
[6,] 0.0000000 0.7595584
[[1]]$param$TY
[1] 0 0 0 0 0 0
[[1]]$param$GA
NULL
[[1]]$param$KA
NULL
[[1]]$misspec
[[1]]$misspec$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$misspec$BE
NULL
[[1]]$misspec$AL
[1] 0 0
[[1]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$misspec$LY
[,1] [,2]
[1,] 0.72419351 -0.05275539
[2,] 0.74050127 -0.08833830
[3,] 0.77216964 0.08476384
[4,] 0.01407010 0.76881943
[5,] 0.03938613 0.77808042
[6,] -0.07272192 0.75955843
[[1]]$misspec$TY
[1] 0 0 0 0 0 0
[[1]]$misspec$GA
NULL
[[1]]$misspec$KA
NULL
[[1]]$misOnly
[[1]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 -0.05275539
[2,] 0.00000000 -0.08833830
[3,] 0.00000000 0.08476384
[4,] 0.01407010 0.00000000
[5,] 0.03938613 0.00000000
[6,] -0.07272192 0.00000000
[[1]]$misOnly$PS
NULL
[[1]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[1]]$misOnly$TE
NULL
[[1]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[1]]$misOnly$BE
NULL
[[1]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[1]]$misOnly$VY
NULL
[[1]]$misOnly$VPS
[1] 0 0
[[1]]$misOnly$VE
[1] 0 0
[[1]]$misOnly$TY
[1] 0 0 0 0 0 0
[[1]]$misOnly$AL
[1] 0 0
[[1]]$misOnly$MY
NULL
[[1]]$misOnly$ME
[1] 0 0
[[1]]$misOnly$KA
NULL
[[1]]$misOnly$GA
NULL
[[2]]
[[2]]$param
[[2]]$param$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$param$BE
NULL
[[2]]$param$AL
[1] 0 0
[[2]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$param$LY
[,1] [,2]
[1,] 0.7241935 0.0000000
[2,] 0.7405013 0.0000000
[3,] 0.7721696 0.0000000
[4,] 0.0000000 0.7688194
[5,] 0.0000000 0.7780804
[6,] 0.0000000 0.7595584
[[2]]$param$TY
[1] 0 0 0 0 0 0
[[2]]$param$GA
NULL
[[2]]$param$KA
NULL
[[2]]$misspec
[[2]]$misspec$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$misspec$BE
NULL
[[2]]$misspec$AL
[1] 0 0
[[2]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$misspec$LY
[,1] [,2]
[1,] 0.72419351 0.04292407
[2,] 0.74050127 -0.00326267
[3,] 0.77216964 0.09515629
[4,] 0.04201825 0.76881943
[5,] 0.01885561 0.77808042
[6,] 0.06510299 0.75955843
[[2]]$misspec$TY
[1] 0 0 0 0 0 0
[[2]]$misspec$GA
NULL
[[2]]$misspec$KA
NULL
[[2]]$misOnly
[[2]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 0.04292407
[2,] 0.00000000 -0.00326267
[3,] 0.00000000 0.09515629
[4,] 0.04201825 0.00000000
[5,] 0.01885561 0.00000000
[6,] 0.06510299 0.00000000
[[2]]$misOnly$PS
NULL
[[2]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[2]]$misOnly$TE
NULL
[[2]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[2]]$misOnly$BE
NULL
[[2]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[2]]$misOnly$VY
NULL
[[2]]$misOnly$VPS
[1] 0 0
[[2]]$misOnly$VE
[1] 0 0
[[2]]$misOnly$TY
[1] 0 0 0 0 0 0
[[2]]$misOnly$AL
[1] 0 0
[[2]]$misOnly$MY
NULL
[[2]]$misOnly$ME
[1] 0 0
[[2]]$misOnly$KA
NULL
[[2]]$misOnly$GA
NULL
[[1]]
[[1]]$param
[[1]]$param$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$param$BE
NULL
[[1]]$param$AL
[1] 0 0
[[1]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$param$LY
[,1] [,2]
[1,] 0.7361737 0.0000000
[2,] 0.7536268 0.0000000
[3,] 0.7234897 0.0000000
[4,] 0.0000000 0.7239286
[5,] 0.0000000 0.7349521
[6,] 0.0000000 0.7129052
[[1]]$param$TY
[1] 0 0 0 0 0 0
[[1]]$param$GA
NULL
[[1]]$param$KA
NULL
[[1]]$misspec
[[1]]$misspec$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$misspec$BE
NULL
[[1]]$misspec$AL
[1] 0 0
[[1]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$misspec$LY
[,1] [,2]
[1,] 0.73617370 -0.004289149
[2,] 0.75362684 0.036223525
[3,] 0.72348969 0.021511561
[4,] -0.08716595 0.723928637
[5,] 0.09870758 0.734952100
[6,] -0.05957009 0.712905175
[[1]]$misspec$TY
[1] 0 0 0 0 0 0
[[1]]$misspec$GA
NULL
[[1]]$misspec$KA
NULL
[[1]]$misOnly
[[1]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 -0.004289149
[2,] 0.00000000 0.036223525
[3,] 0.00000000 0.021511561
[4,] -0.08716595 0.000000000
[5,] 0.09870758 0.000000000
[6,] -0.05957009 0.000000000
[[1]]$misOnly$PS
NULL
[[1]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[1]]$misOnly$TE
NULL
[[1]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[1]]$misOnly$BE
NULL
[[1]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[1]]$misOnly$VY
NULL
[[1]]$misOnly$VPS
[1] 0 0
[[1]]$misOnly$VE
[1] 0 0
[[1]]$misOnly$TY
[1] 0 0 0 0 0 0
[[1]]$misOnly$AL
[1] 0 0
[[1]]$misOnly$MY
NULL
[[1]]$misOnly$ME
[1] 0 0
[[1]]$misOnly$KA
NULL
[[1]]$misOnly$GA
NULL
[[2]]
[[2]]$param
[[2]]$param$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$param$BE
NULL
[[2]]$param$AL
[1] 0 0
[[2]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$param$LY
[,1] [,2]
[1,] 0.7361737 0.0000000
[2,] 0.7536268 0.0000000
[3,] 0.7234897 0.0000000
[4,] 0.0000000 0.7239286
[5,] 0.0000000 0.7349521
[6,] 0.0000000 0.7129052
[[2]]$param$TY
[1] 0 0 0 0 0 0
[[2]]$param$GA
NULL
[[2]]$param$KA
NULL
[[2]]$misspec
[[2]]$misspec$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$misspec$BE
NULL
[[2]]$misspec$AL
[1] 0 0
[[2]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$misspec$LY
[,1] [,2]
[1,] 0.73617370 0.04015608
[2,] 0.75362684 0.01680643
[3,] 0.72348969 -0.03618823
[4,] -0.03417573 0.72392864
[5,] 0.07346223 0.73495210
[6,] -0.08308473 0.71290517
[[2]]$misspec$TY
[1] 0 0 0 0 0 0
[[2]]$misspec$GA
NULL
[[2]]$misspec$KA
NULL
[[2]]$misOnly
[[2]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 0.04015608
[2,] 0.00000000 0.01680643
[3,] 0.00000000 -0.03618823
[4,] -0.03417573 0.00000000
[5,] 0.07346223 0.00000000
[6,] -0.08308473 0.00000000
[[2]]$misOnly$PS
NULL
[[2]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[2]]$misOnly$TE
NULL
[[2]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[2]]$misOnly$BE
NULL
[[2]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[2]]$misOnly$VY
NULL
[[2]]$misOnly$VPS
[1] 0 0
[[2]]$misOnly$VE
[1] 0 0
[[2]]$misOnly$TY
[1] 0 0 0 0 0 0
[[2]]$misOnly$AL
[1] 0 0
[[2]]$misOnly$MY
NULL
[[2]]$misOnly$ME
[1] 0 0
[[2]]$misOnly$KA
NULL
[[2]]$misOnly$GA
NULL
[[1]]
[[1]]$param
[[1]]$param$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$param$BE
NULL
[[1]]$param$AL
[1] 0 0
[[1]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$param$LY
[,1] [,2]
[1,] 0.7211230 0.0000000
[2,] 0.7903581 0.0000000
[3,] 0.7194861 0.0000000
[4,] 0.0000000 0.7412148
[5,] 0.0000000 0.7420583
[6,] 0.0000000 0.7403714
[[1]]$param$TY
[1] 0 0 0 0 0 0
[[1]]$param$GA
NULL
[[1]]$param$KA
NULL
[[1]]$misspec
[[1]]$misspec$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$misspec$BE
NULL
[[1]]$misspec$AL
[1] 0 0
[[1]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$misspec$LY
[,1] [,2]
[1,] 0.72112299 0.06344156
[2,] 0.79035812 0.03743867
[3,] 0.71948613 0.01543237
[4,] 0.07021005 0.74121481
[5,] -0.01243553 0.74205826
[6,] 0.09959251 0.74037137
[[1]]$misspec$TY
[1] 0 0 0 0 0 0
[[1]]$misspec$GA
NULL
[[1]]$misspec$KA
NULL
[[1]]$misOnly
[[1]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 0.06344156
[2,] 0.00000000 0.03743867
[3,] 0.00000000 0.01543237
[4,] 0.07021005 0.00000000
[5,] -0.01243553 0.00000000
[6,] 0.09959251 0.00000000
[[1]]$misOnly$PS
NULL
[[1]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[1]]$misOnly$TE
NULL
[[1]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[1]]$misOnly$BE
NULL
[[1]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[1]]$misOnly$VY
NULL
[[1]]$misOnly$VPS
[1] 0 0
[[1]]$misOnly$VE
[1] 0 0
[[1]]$misOnly$TY
[1] 0 0 0 0 0 0
[[1]]$misOnly$AL
[1] 0 0
[[1]]$misOnly$MY
NULL
[[1]]$misOnly$ME
[1] 0 0
[[1]]$misOnly$KA
NULL
[[1]]$misOnly$GA
NULL
[[2]]
[[2]]$param
[[2]]$param$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$param$BE
NULL
[[2]]$param$AL
[1] 0 0
[[2]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$param$LY
[,1] [,2]
[1,] 0.7211230 0.0000000
[2,] 0.7903581 0.0000000
[3,] 0.7194861 0.0000000
[4,] 0.0000000 0.7412148
[5,] 0.0000000 0.7420583
[6,] 0.0000000 0.7403714
[[2]]$param$TY
[1] 0 0 0 0 0 0
[[2]]$param$GA
NULL
[[2]]$param$KA
NULL
[[2]]$misspec
[[2]]$misspec$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$misspec$BE
NULL
[[2]]$misspec$AL
[1] 0 0
[[2]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$misspec$LY
[,1] [,2]
[1,] 0.72112299 -0.08539157
[2,] 0.79035812 0.09543299
[3,] 0.71948613 0.07954384
[4,] 0.03368679 0.74121481
[5,] -0.04465677 0.74205826
[6,] -0.07235942 0.74037137
[[2]]$misspec$TY
[1] 0 0 0 0 0 0
[[2]]$misspec$GA
NULL
[[2]]$misspec$KA
NULL
[[2]]$misOnly
[[2]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 -0.08539157
[2,] 0.00000000 0.09543299
[3,] 0.00000000 0.07954384
[4,] 0.03368679 0.00000000
[5,] -0.04465677 0.00000000
[6,] -0.07235942 0.00000000
[[2]]$misOnly$PS
NULL
[[2]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[2]]$misOnly$TE
NULL
[[2]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[2]]$misOnly$BE
NULL
[[2]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[2]]$misOnly$VY
NULL
[[2]]$misOnly$VPS
[1] 0 0
[[2]]$misOnly$VE
[1] 0 0
[[2]]$misOnly$TY
[1] 0 0 0 0 0 0
[[2]]$misOnly$AL
[1] 0 0
[[2]]$misOnly$MY
NULL
[[2]]$misOnly$ME
[1] 0 0
[[2]]$misOnly$KA
NULL
[[2]]$misOnly$GA
NULL
[[1]]
[[1]]$param
[[1]]$param$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$param$BE
NULL
[[1]]$param$AL
[1] 0 0
[[1]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$param$LY
[,1] [,2]
[1,] 0.7482903 0.0000000
[2,] 0.7583208 0.0000000
[3,] 0.7437963 0.0000000
[4,] 0.0000000 0.7700825
[5,] 0.0000000 0.7840322
[6,] 0.0000000 0.7561328
[[1]]$param$TY
[1] 0 0 0 0 0 0
[[1]]$param$GA
NULL
[[1]]$param$KA
NULL
[[1]]$misspec
[[1]]$misspec$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$misspec$BE
NULL
[[1]]$misspec$AL
[1] 0 0
[[1]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$misspec$LY
[,1] [,2]
[1,] 0.748290304 0.07765994
[2,] 0.758320777 -0.07698941
[3,] 0.743796311 0.03852196
[4,] -0.049575834 0.77008246
[5,] -0.007390154 0.78403217
[6,] -0.062777875 0.75613276
[[1]]$misspec$TY
[1] 0 0 0 0 0 0
[[1]]$misspec$GA
NULL
[[1]]$misspec$KA
NULL
[[1]]$misOnly
[[1]]$misOnly$LY
[,1] [,2]
[1,] 0.000000000 0.07765994
[2,] 0.000000000 -0.07698941
[3,] 0.000000000 0.03852196
[4,] -0.049575834 0.00000000
[5,] -0.007390154 0.00000000
[6,] -0.062777875 0.00000000
[[1]]$misOnly$PS
NULL
[[1]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[1]]$misOnly$TE
NULL
[[1]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[1]]$misOnly$BE
NULL
[[1]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[1]]$misOnly$VY
NULL
[[1]]$misOnly$VPS
[1] 0 0
[[1]]$misOnly$VE
[1] 0 0
[[1]]$misOnly$TY
[1] 0 0 0 0 0 0
[[1]]$misOnly$AL
[1] 0 0
[[1]]$misOnly$MY
NULL
[[1]]$misOnly$ME
[1] 0 0
[[1]]$misOnly$KA
NULL
[[1]]$misOnly$GA
NULL
[[2]]
[[2]]$param
[[2]]$param$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$param$BE
NULL
[[2]]$param$AL
[1] 0 0
[[2]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$param$LY
[,1] [,2]
[1,] 0.7482903 0.0000000
[2,] 0.7583208 0.0000000
[3,] 0.7437963 0.0000000
[4,] 0.0000000 0.7700825
[5,] 0.0000000 0.7840322
[6,] 0.0000000 0.7561328
[[2]]$param$TY
[1] 0 0 0 0 0 0
[[2]]$param$GA
NULL
[[2]]$param$KA
NULL
[[2]]$misspec
[[2]]$misspec$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$misspec$BE
NULL
[[2]]$misspec$AL
[1] 0 0
[[2]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$misspec$LY
[,1] [,2]
[1,] 0.74829030 -0.07157370
[2,] 0.75832078 -0.07827016
[3,] 0.74379631 0.01977253
[4,] 0.01437080 0.77008246
[5,] -0.03722602 0.78403217
[6,] 0.02902977 0.75613276
[[2]]$misspec$TY
[1] 0 0 0 0 0 0
[[2]]$misspec$GA
NULL
[[2]]$misspec$KA
NULL
[[2]]$misOnly
[[2]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 -0.07157370
[2,] 0.00000000 -0.07827016
[3,] 0.00000000 0.01977253
[4,] 0.01437080 0.00000000
[5,] -0.03722602 0.00000000
[6,] 0.02902977 0.00000000
[[2]]$misOnly$PS
NULL
[[2]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[2]]$misOnly$TE
NULL
[[2]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[2]]$misOnly$BE
NULL
[[2]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[2]]$misOnly$VY
NULL
[[2]]$misOnly$VPS
[1] 0 0
[[2]]$misOnly$VE
[1] 0 0
[[2]]$misOnly$TY
[1] 0 0 0 0 0 0
[[2]]$misOnly$AL
[1] 0 0
[[2]]$misOnly$MY
NULL
[[2]]$misOnly$ME
[1] 0 0
[[2]]$misOnly$KA
NULL
[[2]]$misOnly$GA
NULL
[[1]]
[[1]]$param
[[1]]$param$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$param$BE
NULL
[[1]]$param$AL
[1] 0 0
[[1]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$param$LY
[,1] [,2]
[1,] 0.7115956 0.0000000
[2,] 0.7476529 0.0000000
[3,] 0.7250151 0.0000000
[4,] 0.0000000 0.7648150
[5,] 0.0000000 0.7949736
[6,] 0.0000000 0.7346564
[[1]]$param$TY
[1] 0 0 0 0 0 0
[[1]]$param$GA
NULL
[[1]]$param$KA
NULL
[[1]]$misspec
[[1]]$misspec$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$misspec$BE
NULL
[[1]]$misspec$AL
[1] 0 0
[[1]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$misspec$LY
[,1] [,2]
[1,] 0.71159558 -0.046409169
[2,] 0.74765291 0.005628134
[3,] 0.72501509 -0.017911026
[4,] 0.03290256 0.764815012
[5,] 0.01626334 0.794973637
[6,] 0.04761273 0.734656388
[[1]]$misspec$TY
[1] 0 0 0 0 0 0
[[1]]$misspec$GA
NULL
[[1]]$misspec$KA
NULL
[[1]]$misOnly
[[1]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 -0.046409169
[2,] 0.00000000 0.005628134
[3,] 0.00000000 -0.017911026
[4,] 0.03290256 0.000000000
[5,] 0.01626334 0.000000000
[6,] 0.04761273 0.000000000
[[1]]$misOnly$PS
NULL
[[1]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[1]]$misOnly$TE
NULL
[[1]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[1]]$misOnly$BE
NULL
[[1]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[1]]$misOnly$VY
NULL
[[1]]$misOnly$VPS
[1] 0 0
[[1]]$misOnly$VE
[1] 0 0
[[1]]$misOnly$TY
[1] 0 0 0 0 0 0
[[1]]$misOnly$AL
[1] 0 0
[[1]]$misOnly$MY
NULL
[[1]]$misOnly$ME
[1] 0 0
[[1]]$misOnly$KA
NULL
[[1]]$misOnly$GA
NULL
[[2]]
[[2]]$param
[[2]]$param$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$param$BE
NULL
[[2]]$param$AL
[1] 0 0
[[2]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$param$LY
[,1] [,2]
[1,] 0.7115956 0.0000000
[2,] 0.7476529 0.0000000
[3,] 0.7250151 0.0000000
[4,] 0.0000000 0.7648150
[5,] 0.0000000 0.7949736
[6,] 0.0000000 0.7346564
[[2]]$param$TY
[1] 0 0 0 0 0 0
[[2]]$param$GA
NULL
[[2]]$param$KA
NULL
[[2]]$misspec
[[2]]$misspec$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$misspec$BE
NULL
[[2]]$misspec$AL
[1] 0 0
[[2]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$misspec$LY
[,1] [,2]
[1,] 0.71159558 -0.003394048
[2,] 0.74765291 -0.072317280
[3,] 0.72501509 0.048608383
[4,] -0.03478136 0.764815012
[5,] 0.07369535 0.794973637
[6,] -0.03800015 0.734656388
[[2]]$misspec$TY
[1] 0 0 0 0 0 0
[[2]]$misspec$GA
NULL
[[2]]$misspec$KA
NULL
[[2]]$misOnly
[[2]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 -0.003394048
[2,] 0.00000000 -0.072317280
[3,] 0.00000000 0.048608383
[4,] -0.03478136 0.000000000
[5,] 0.07369535 0.000000000
[6,] -0.03800015 0.000000000
[[2]]$misOnly$PS
NULL
[[2]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[2]]$misOnly$TE
NULL
[[2]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[2]]$misOnly$BE
NULL
[[2]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[2]]$misOnly$VY
NULL
[[2]]$misOnly$VPS
[1] 0 0
[[2]]$misOnly$VE
[1] 0 0
[[2]]$misOnly$TY
[1] 0 0 0 0 0 0
[[2]]$misOnly$AL
[1] 0 0
[[2]]$misOnly$MY
NULL
[[2]]$misOnly$ME
[1] 0 0
[[2]]$misOnly$KA
NULL
[[2]]$misOnly$GA
NULL
[[1]]
[[1]]$param
[[1]]$param$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$param$BE
NULL
[[1]]$param$AL
[1] 0 0
[[1]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$param$LY
[,1] [,2]
[1,] 0.7894022 0.0000000
[2,] 0.7528532 0.0000000
[3,] 0.7999546 0.0000000
[4,] 0.0000000 0.7287025
[5,] 0.0000000 0.7012566
[6,] 0.0000000 0.7561484
[[1]]$param$TY
[1] 0 0 0 0 0 0
[[1]]$param$GA
NULL
[[1]]$param$KA
NULL
[[1]]$misspec
[[1]]$misspec$PS
[,1] [,2]
[1,] 1.0 0.5
[2,] 0.5 1.0
[[1]]$misspec$BE
NULL
[[1]]$misspec$AL
[1] 0 0
[[1]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[1]]$misspec$LY
[,1] [,2]
[1,] 0.78940217 0.05493237
[2,] 0.75285320 -0.09493972
[3,] 0.79995456 -0.09030231
[4,] 0.03162615 0.72870250
[5,] -0.07186846 0.70125664
[6,] -0.08496611 0.75614835
[[1]]$misspec$TY
[1] 0 0 0 0 0 0
[[1]]$misspec$GA
NULL
[[1]]$misspec$KA
NULL
[[1]]$misOnly
[[1]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 0.05493237
[2,] 0.00000000 -0.09493972
[3,] 0.00000000 -0.09030231
[4,] 0.03162615 0.00000000
[5,] -0.07186846 0.00000000
[6,] -0.08496611 0.00000000
[[1]]$misOnly$PS
NULL
[[1]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[1]]$misOnly$TE
NULL
[[1]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[1]]$misOnly$BE
NULL
[[1]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[1]]$misOnly$VY
NULL
[[1]]$misOnly$VPS
[1] 0 0
[[1]]$misOnly$VE
[1] 0 0
[[1]]$misOnly$TY
[1] 0 0 0 0 0 0
[[1]]$misOnly$AL
[1] 0 0
[[1]]$misOnly$MY
NULL
[[1]]$misOnly$ME
[1] 0 0
[[1]]$misOnly$KA
NULL
[[1]]$misOnly$GA
NULL
[[2]]
[[2]]$param
[[2]]$param$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$param$BE
NULL
[[2]]$param$AL
[1] 0 0
[[2]]$param$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$param$LY
[,1] [,2]
[1,] 0.7894022 0.0000000
[2,] 0.7528532 0.0000000
[3,] 0.7999546 0.0000000
[4,] 0.0000000 0.7287025
[5,] 0.0000000 0.7012566
[6,] 0.0000000 0.7561484
[[2]]$param$TY
[1] 0 0 0 0 0 0
[[2]]$param$GA
NULL
[[2]]$param$KA
NULL
[[2]]$misspec
[[2]]$misspec$PS
[,1] [,2]
[1,] 1.1000000 0.5744563
[2,] 0.5744563 1.2000000
[[2]]$misspec$BE
NULL
[[2]]$misspec$AL
[1] 0 0
[[2]]$misspec$TE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0.51 0.00 0.00 0.00 0.00 0.00
[2,] 0.00 0.51 0.00 0.00 0.00 0.00
[3,] 0.00 0.00 0.51 0.00 0.00 0.00
[4,] 0.00 0.00 0.00 0.51 0.00 0.00
[5,] 0.00 0.00 0.00 0.00 0.51 0.00
[6,] 0.00 0.00 0.00 0.00 0.00 0.51
[[2]]$misspec$LY
[,1] [,2]
[1,] 0.78940217 0.06644917
[2,] 0.75285320 -0.03118475
[3,] 0.79995456 0.09330570
[4,] 0.07645396 0.72870250
[5,] 0.02451202 0.70125664
[6,] 0.07190931 0.75614835
[[2]]$misspec$TY
[1] 0 0 0 0 0 0
[[2]]$misspec$GA
NULL
[[2]]$misspec$KA
NULL
[[2]]$misOnly
[[2]]$misOnly$LY
[,1] [,2]
[1,] 0.00000000 0.06644917
[2,] 0.00000000 -0.03118475
[3,] 0.00000000 0.09330570
[4,] 0.07645396 0.00000000
[5,] 0.02451202 0.00000000
[6,] 0.07190931 0.00000000
[[2]]$misOnly$PS
NULL
[[2]]$misOnly$RPS
[,1] [,2]
[1,] 0 0
[2,] 0 0
[[2]]$misOnly$TE
NULL
[[2]]$misOnly$RTE
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 0 0 0 0 0 0
[2,] 0 0 0 0 0 0
[3,] 0 0 0 0 0 0
[4,] 0 0 0 0 0 0
[5,] 0 0 0 0 0 0
[6,] 0 0 0 0 0 0
[[2]]$misOnly$BE
NULL
[[2]]$misOnly$VTE
[1] 0 0 0 0 0 0
[[2]]$misOnly$VY
NULL
[[2]]$misOnly$VPS
[1] 0 0
[[2]]$misOnly$VE
[1] 0 0
[[2]]$misOnly$TY
[1] 0 0 0 0 0 0
[[2]]$misOnly$AL
[1] 0 0
[[2]]$misOnly$MY
NULL
[[2]]$misOnly$ME
[1] 0 0
[[2]]$misOnly$KA
NULL
[[2]]$misOnly$GA
NULL
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