Nothing
setGeneric('shadeplot', function(x, ...)standardGeneric('shadeplot'))
setMethod('shadeplot', signature(x = 'Shade'),
function(x,
main = '',
xlab = expression(L[ew]),
ylab = expression(L[ns]),
n = 9, ...){
red <- x@distances
FS.loess <- x@FS.loess
Yf.loess <- x@Yf.loess
struct <- x@struct
mode <- x@modeTrk
if (mode=='two'){
Lew <- seq(min(red$Lew),max(red$Lew),length = 100)
Lns <- seq(min(red$Lns),max(red$Lns),length = 100)
Red <- expand.grid(Lew = Lew,Lns = Lns)
FS <- predict(FS.loess,Red)
Red$FS <- as.numeric(FS)
AreaG <- with(struct,L*W)
GRR <- Red$Lew*Red$Lns/AreaG
Red$GRR <- GRR
FS.m <- matrix(1-FS,
nrow = length(Lew),
ncol = length(Lns))
GRR.m <- matrix(GRR,
nrow = length(Lew),
ncol = length(Lns))
niveles <- signif(seq(min(FS.m),max(FS.m),l = n+1),3)
pruebaCB <- ("RColorBrewer" %in% .packages())
if (pruebaCB) {
paleta <- rev(brewer.pal(n, 'YlOrRd'))
} else {
paleta <- rev(heat.colors(n))}
oldpar <- par(no.readonly = TRUE)
on.exit(par(oldpar))
par(mar = c(4.1,4.1,2.1,2.1))
filled.contour(x = Lew,y = Lns,z = FS.m,#...,
col = paleta, #levels = niveles,
nlevels = n,
plot.title = title(xlab = xlab,
ylab = ylab, main = main),
plot.axes = {
axis(1); axis(2);
contour(Lew, Lns, FS.m,
nlevels = n, #levels = niveles,
col = "black", labcex = .8, add = TRUE)
contour(Lew, Lns, GRR.m,
col = "black", lty = 3, labcex = .8, add = TRUE)
grid(col = "white",lty = 3)},
key.title = title("1-FS",cex.main = .8))
}
if (mode=='horiz') {
Lew <- seq(min(red$Lew),max(red$Lew),length = 100)
FS <- predict(FS.loess,Lew)
GRR <- Lew/struct$L
plot(GRR,1-FS,main = main,type = 'l',...)
grid() }
if (mode=='fixed'){
D <- seq(min(red$D),max(red$D),length = 100)
FS <- predict(FS.loess,D)
GRR <- D/struct$L
plot(GRR,1-FS,main = main,type = 'l',...)
grid() }
}
)
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