Mixed-Effect Models, Particularly Spatial Models

adjlg | Simulated data set for testing sparse-precision code |

AIC | Extractors for informations criteria such as AIC |

anova.HLfit | Likelihood ratio test of fixed effects. |

arabidopsis | Arabidopsis genetic and climatic data |

autoregressive | Fitting autoregressive models |

blackcap | Genetic polymorphism in relation to migration in the blackcap |

CauchyCorr | Cauchy correlation function and Cauchy formula term |

COMPoisson | Conway-Maxwell-Poisson (COM-Poisson) GLM family |

confint | Confidence intervals for fixed-effect parameters |

corMatern | Matern Correlation Structure as a corSpatial object |

corr_family | 'corr_family' objects |

corrHLfit | Fits a mixed model, typically a spatial GLMM. |

corrMatrix | Using a corrMatrix argument |

covStruct | Specifying correlation structures |

designL.from.Corr | Computation of "square root" of correlation matrix |

extractors | Functions to extract various components of a fit |

fitme | Fitting function for fixed- and mixed-effect models with GLM... |

fixed | Fixing some parameters |

fixed.LRT | Likelihood ratio test of fixed effects. |

freight | Freight dataset |

get_matrix | Functions to extract various matrices used in fitting a... |

get_ranPars | Operations on lists of parameters |

GLM.fit | Fitting generalized linear models without initial-value or... |

good-practice | Clear and trustworthy formulas |

HLCor | Fits a (spatially) correlated mixed model, for given... |

HLfit | Fit mixed models with given correlation matrix |

how | Extract information about how an object was obtained |

inverse.Gamma | Distribution families for Gamma and inverse Gamma-distributed... |

is_separated | Checking for (quasi-)separation in binomial-response model. |

Loaloa | Loa loa prevalence in North Cameroon, 1991-2001 |

make.scaled.dist | Scaled distances between unique locations |

mapMM | Colorful plots of predicted responses in two-dimensional... |

Matern.corr | Matern correlation function and Matern formula term. |

mat_sqrt | Computation of "square root" of symmetric positive definite... |

MSFDR | Multiple-Stage False Discovery Rate procedure |

multinomial | Analyzing multinomial data |

negbin | Family function for GLMs and mixed models with negative... |

options | spaMM options settings |

pedigree | Fit mixed-effects models incorporating pedigrees |

phiHGLM | Fitting random effects in the residual dispersion model |

plot.HL | Model checking plots for mixed models |

PLS-internals | Internal, Experimental Functions for procedure using the... |

poisson | Family function for GLMs and mixed models with Poisson and... |

predict | Prediction from a model fit. |

rankinfo | Checking the rank of the fixed-effects design matrix |

salamander | Salamander mating data |

scotlip | Lip cancer in Scotland 1975 - 1980 |

seaMask | Masks of seas or lands |

seeds | Seed germination data |

separation | Checking separation in binomial-response models |

simulate.HLCor | Simulate realizations of a fitted model. |

spaMM | Inference in mixed models, in particular spatial GLMMs |

spaMM_boot | Parametric bootstrap |

spaMMcolors | A flashy color palette. |

spaMM-conventions | spaMM conventions and differences from related fitting... |

spaMM.filled.contour | Level (Contour) Plots with better aspect ratio control (for... |

spaMM-internal | Internal spaMM Functions |

spaMM-S3 | S3 methods of generics defined in other packages |

sparse_precision | Sparse_precision algorithm |

stripHLfit | Reduce the size of fitted objects |

summary.HL | Summary and print methods for fit and test results. |

sym_svd | Singular Value Decomposition of a Symmetric Matrix |

update | Updates an HLCor or HLfit fit |

vcov | Extract covariance or correlation matrices from a fitted... |

wafers | Data from a resistivity experiment for semiconductor... |

welding | Welding data set |

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