Man pages for spacodiR
Spatial and Phylogenetic Analysis of Community Diversity
| as.phylocom | converting between data formats for community phylogenetics |
| as.picante | converting between data formats for community phylogenetics |
| as.spacodi | converting between data formats for community phylogenetics |
| match.spacodi.data | pruning a tree to match datasets used in SPACoDi |
| phy.deresolve | collapse phylogenetic nodes into multichotomies |
| phy.dotplot | EXPERIMENTAL: plotting members of communities (or plots) on a... |
| phy.nodetimes | finding splitting times for nodes |
| resamp.1a | randomizing a community phylogenetics matrix: '1a' of Hardy... |
| resamp.1s | randomizing a community phylogenetics matrix: '1s' of Hardy... |
| resamp.2s | randomizing a community phylogenetics matrix: '2s' of Hardy... |
| resamp.2x | randomizing a community phylogenetics matrix: '2x' of Hardy... |
| resamp.3i | randomizing a community phylogenetics matrix: '3i' of Hardy... |
| resamp.3t | randomizing a community phylogenetics matrix: '3t' of Hardy... |
| resamp.3x | randomizing a community phylogenetics matrix: '3x' of Hardy... |
| resamp.phy | partial phylogeny randomization for tips |
| resamp.test | statistical comparison of sets of values by randomization |
| spacodi.by.nodes | conducting randomization tests of turnover in diversity... |
| spacodi.calc | measuring spatial and phylogenetic structuring of diversity... |
| spacodi-internal | internal SPACoDi functions |
| spacodi-package | main: Spatial and Phylogenetic Analysis of Community... |
| spacodi.permutplot | EXPERIMENTAL: plotting observed and expected community... |
| spacodi.treeplot | EXPERIMENTAL: plotting diversity turnover on trees |
| sp.example | example data for spacodiR |
| write.spacodi.data | saving community phylogenetics datasets to a file |
