write.spacodi.data: saving community phylogenetics datasets to a file
In spacodiR: Spatial and Phylogenetic Analysis of Community Diversity

Description Usage Arguments Details Author(s) See Also Examples

write.spacodi.data generates community phylogenetic datasets to be used in the external program SPACoDi

1	write.spacodi.data(sp.plot, outfile)

`sp.plot`	a community dataset formatted for the R-package spacodiR (see `as.spacodi`)
`outfile`	a formatted file for the Windows executable `SPACoDi`

This utility writes a species-by-plots matrix into a format readable by the external program SPACoDi, a Windows executable (available at http://ebe.ulb.ac.be/ebe/Software.html).

Jonathan Eastman

as.spacodi for converting from phylocom to spacodiR formats; see spacodi.calc for community diversity measures of empirical data

# generate a community-phylogenetics dataset
data(sp.example)
attach(sp.example)

# save the dataset to working directory
write.spacodi.data(sp.plot=spl, outfile="spacodi.formatted.txt")