resamp.1s: randomizing a community phylogenetics matrix: '1s' of Hardy...
In spacodiR: Spatial and Phylogenetic Analysis of Community Diversity
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
View source: R/dataResampling.R
Description
resamp.1s is used for resampling data within a community dataset
Usage
1
resamp.1s(obj)
Arguments
obj
a community dataset in spacodiR format (see as.spacodi)
Details
A resampling procedure for a species-by-plots matrix, where observed abundances are shuffled across species and plots.
Value
A shuffled dataset
Author(s)
Timothy Paine and Jonathan Eastman
References
HARDY OJ. 2008. Testing the spatial phylogenetic
structure of local communities: statistical performances of
different null models and test statistics on a locally neutral
community. Journal of Ecology 96:914-926.
See Also
spacodi.by.nodes for permutation tests of community diversity and additional randomization methods;
see spacodi.calc for the main underlying function; randomizeMatrix
Examples
1
2
3
4
5
6
data(sp.example)
attach(sp.example)
spl
# shuffle dataset
resamp.1s(obj=spl)
spacodiR documentation built on May 2, 2019, 8:26 a.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
View source: R/dataResampling.R
Description
resamp.1s is used for resampling data within a community dataset
Usage
1 | resamp.1s(obj)
|
Arguments
obj |
a community dataset in spacodiR format (see |
Details
A resampling procedure for a species-by-plots matrix, where observed abundances are shuffled across species and plots.
Value
A shuffled dataset
Author(s)
Timothy Paine and Jonathan Eastman
References
HARDY OJ. 2008. Testing the spatial phylogenetic structure of local communities: statistical performances of different null models and test statistics on a locally neutral community. Journal of Ecology 96:914-926.
See Also
spacodi.by.nodes for permutation tests of community diversity and additional randomization methods;
see spacodi.calc for the main underlying function; randomizeMatrix
Examples
1 2 3 4 5 6 | data(sp.example)
attach(sp.example)
spl
# shuffle dataset
resamp.1s(obj=spl)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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