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#'
#' Header for all (concatenated) test files
#'
#' Require spatstat.random
#' Obtain environment variable controlling tests.
#'
#' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $
require(spatstat.random)
FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0)
ALWAYS <- TRUE
cat(paste("--------- Executing",
if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of",
"test code -----------\n"))
#' tests/randoms.R
#' Further tests of random generation code
#' $Revision: 1.18 $ $Date: 2024/02/26 05:43:36 $
local({
if(FULLTEST) {
#' cases not covered in examples
A <- runifdisc(6, nsim=2)
A <- runifpoispp(5, nsim=2)
A <- runifpoispp(0, nsim=2)
A <- rSSI(0.05, 6, nsim=2)
A <- rSSI(0.05, 10, win=square(c(-0.5, 1.5)), x.init=A[[1]], nsim=2)
A <- rstrat(nx=4, nsim=2)
A <- rcell(square(1), nx=5, nsim=2)
}
if(ALWAYS) { # involves C code etc
A <- rthin(cells, P=0.5, nsim=2)
A <- rthin(cells, runif(42))
A <- rthin(cells[FALSE], P=0.5, nsim=2)
}
f <- function(x,y) { 10*x }
Z <- as.im(f, square(1))
if(ALWAYS) {
A <- rpoint(n=6, f=f, fmax=10, nsim=2)
A <- rpoint(n=6, f=Z, fmax=10, nsim=2)
A <- rpoint(n=0, f=f, fmax=10, nsim=2)
A <- rpoint(n=0, f=Z, fmax=10, nsim=2)
op <- spatstat.options(fastpois=FALSE)
A <- runifpoispp(5, nsim=2)
A <- rpoispp(Z)
spatstat.options(op)
}
if(FULLTEST) {
b3 <- box3(c(0,1))
b4 <- boxx(c(0,1), c(0,1), c(0,1), c(0,1))
b5 <- c(0, 2, 0, 2)
X <- rMaternInhibition(2, kappa=20, r=0.1, win=b3)
Y <- rMaternInhibition(2, kappa=20, r=0.1, win=b4)
Y <- rMaternInhibition(2, kappa=20, r=0.1, win=b5, nsim=2)
X <- rSSI(0.05, 6)
Y <- rSSI(0.05, 6, x.init=X) # no extra points
Z <- rlabel(finpines)
}
f1 <- function(x,y){(x^2 + y^3)/10}
f2 <- function(x,y){(x^3 + y^2)/10}
ZZ <- solist(A=as.im(f1, letterR),
B=as.im(f2, letterR))
g <- function(x,y,m){(10+as.integer(m)) * (x^2 + y^3)}
if(FULLTEST) {
XX <- rmpoispp(ZZ, nsim=3)
YY <- rmpoint(10, f=ZZ, nsim=3)
UU <- rmpoint(10, f=ZZ[[1]], types=letters[1:2])
VV <- rpoint.multi(10, f=g,
marks=factor(sample(letters[1:3], 10, replace=TRUE)),
nsim=3)
}
if(ALWAYS) { # depends on C code
L <- edges(letterR)
E <- runifpoisppOnLines(5, L)
G <- rpoisppOnLines(ZZ, L)
G2 <- rpoisppOnLines(list(A=f1, B=f2), L, lmax=max(sapply(ZZ, max)))
}
if(FULLTEST) {
#' cluster models + bells + whistles
X <- rThomas(10, 0.2, 5, saveLambda=TRUE)
if(is.null(attr(X, "Lambda")))
stop("rThomas did not save Lambda image")
Y <- rThomas(0, 0.2, 5, saveLambda=TRUE)
if(is.null(attr(Y, "Lambda")))
stop("rThomas did not save Lambda image when kappa=0")
X <- rMatClust(10, 0.05, 4, saveLambda=TRUE)
X <- rCauchy(30, 0.01, 5, saveLambda=TRUE)
X <- rVarGamma(30, 2, 5, nu=0.02, saveLambda=TRUE)
Z <- as.im(function(x,y){ 5 * exp(2 * x - 1) }, owin())
Y <- rThomas(10, 0.2, Z, saveLambda=TRUE)
Y <- rMatClust(10, 0.05, Z, saveLambda=TRUE)
Y <- rCauchy(30, 0.01, Z, saveLambda=TRUE)
Y <- rVarGamma(30, 2, Z, nu=0.02, saveLambda=TRUE)
#' inhomogeneous
Moo <- as.im(function(x,y) { 10 * x }, unit.square())
X <- rMatClust(10, 0.2, Moo)
}
if(FULLTEST) {
#' perfect simulation code infrastructure
expandwinPerfect(letterR, 2, 3)
#' trivial cases of random generators for ppx
B4 <- boxx(0:1, 0:1, 0:1, 0:1)
Z0 <- runifpointx(0, domain=B4, nsim=2)
Z1 <- runifpointx(1, domain=B4, nsim=2)
}
})
local({
if(ALWAYS) {
#' Bug in rLGCP spotted by Tilman Davies
X <- rLGCP("matern", function(x,y) { 1 - 0.4* y },
var=2, scale=0.7, nu=0.5, win = square(10),
dimyx=c(32,64))
}
if(FULLTEST) {
## Bug in rGRFcircembed
## when handling incompatible data for 'mu' and 'win'
win <- owin(c(0, 3), c(0, 3))
npix <- 300
spatstat.options(npixel = npix)
beta0 <- 3
beta1 <- 0
sigma2x <- 0.2
range <- 1.2
nu <- 1
set.seed(7)
x0 <- seq(0, 3, length=npix)
y0 <- seq(0, 3, length=npix)
gridcov <- outer(x0, y0, function(x,y) cos(x) - sin(y - 2))
MU <- im(beta0 + beta1 * gridcov, xcol = x0, yrow = y0)
lg.s.c <- rLGCP('matern', mu=MU,
var = sigma2x, scale = range / sqrt(8),
nu = 1, win = win)
}
})
reset.spatstat.options()
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