Files in spatsurv

Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models

README.md R/baseHazST_prior.R R/txtProgressBar2.R R/BsplineHaz.R R/circulant.R R/gompertz.R R/mcmcProgress.R R/optifix.R R/spatsurv.R R/maplayers.R R/surv3d.R R/log_posteriors_and_derivatives_SPDE.R R/weibull.R R/calibratemcmc.R R/multiWayHaz.R R/basehazardspec.R R/spatsurvMisc.R R/makeham.R R/rootweibull.R R/exponential.R R/covarianceFunctions.R R/survspatNS.R R/partial_likelihood.R R/survsim.R R/TPSHaz.R R/tpow.R R/survspat.R R/multiWayHazAdditive.R R/PsplineHaz.R R/plot_baseline_hazard_multiway.R R/splineFunctions.R R/log_posteriors_and_derivatives_polygonal.R R/log_posteriors_and_derivatives_gridded.R R/zzz.R R/GMRF.R R/postprocessing.R R/mcmcIterator.R R/spatgrid.R R/outputSummary.R R/nonspatial_log_likelihood_and_derivatives.R R/log_posteriors_and_derivatives.R R/plottingfunctions.R R/spatial_imputation.R R/mcmcPriors.R R/RWprior.R R/baseHazST.R tests/test_survspat.R tests/test_sim_ana.R tests/iteratorTest.R tests/test_QuadApprox.R man/gradbasehazard.Rd man/reconstruct.bs.Rd man/predict.mcmcspatsurv.Rd man/midpts.Rd man/cumulativeBspline.construct.Rd man/frailtylag1.Rd man/getGrid.Rd man/fstimes.Rd man/print.textSummary.Rd man/ExponentialCovFct.Rd man/txtProgressBar2.Rd man/mcmcPriors.Rd man/indepGaussianprior.Rd man/baselinehazard_multiWay.Rd man/gencens.Rd man/getOptCellwidth.Rd man/CSplot.Rd man/neighLocs.Rd man/spatsurvVignette.Rd man/gradcumbasehazard.basehazardspec.Rd man/gradcumbasehazard.Rd man/density_PP.Rd man/gridY.Rd man/indepGaussianpriorST.Rd man/plot.FFTgrid.Rd man/tpowHaz.Rd man/circulant.matrix.Rd man/GammaFromY_SPDE.Rd man/getcov.Rd man/gradbasehazard.basehazardspec.Rd man/baselinehazard.Rd man/imputationModel.Rd man/proposalVariance_gridded.Rd man/distinfo.basehazardspec.Rd man/blockDiag.Rd man/guess_t.Rd man/fs.Rd man/allocate.Rd man/cumbasehazard.basehazardspec.Rd man/getgrd.Rd man/logPosterior_SPDE.Rd man/resetLoop.Rd man/priorposterior.Rd man/baseHazST.Rd man/hesscumbasehazard.basehazardspec.Rd man/BsplineHaz.Rd man/print.mlspatsurv.Rd man/vcov.mlspatsurv.Rd man/hesscumbasehazard.Rd man/SPDE.Rd man/circulant.Rd man/quantile.mlspatsurv.Rd man/distinfo.Rd man/multiWayHaz.Rd man/randompars.Rd man/MCE.Rd man/etapriorGauss.Rd man/derivpsplineprior.Rd man/mcmcProgressNone.Rd man/reconstruct.bs.mcmcspatsurv.Rd man/EvalCov.Rd man/psplineRWprior.Rd man/reconstruct.bs.coxph.Rd man/is.burnin.Rd man/spatialpars.Rd man/YfromGamma.Rd man/optifix.Rd man/fixParHaz.Rd man/timevaryingPL.Rd man/NonSpatialLogLikelihood_or_gradient.Rd man/proposalVariance_polygonal.Rd man/YFromGamma_SPDE.Rd man/boxplotRisk.Rd man/logPosterior_gridded.Rd man/mcmcProgressPrint.Rd man/basehazard.Rd man/iteration.Rd man/SpikedExponentialCovFct.Rd man/mcmcLoop.Rd man/maxlikparamPHsurv.Rd man/Summarise.Rd man/rootWeibullHaz.Rd man/gridY_polygonal.Rd man/makehamHaz.Rd man/setupPrecMatStruct.Rd man/residuals.mcmcspatsurv.Rd man/covmodel.Rd man/dot-onAttach.Rd man/loop.mcmc.Rd man/getleneta.Rd man/mcmcProgressTextBar.Rd man/fixmatrix.Rd man/vcov.mcmcspatsurv.Rd man/spatsurv-package.Rd man/getBbasis.Rd man/survival_PP.Rd man/fixedpars.Rd man/hazardpars.Rd man/getsurvdata.Rd man/hessbasehazard.basehazardspec.Rd man/survspatNS.Rd man/gamma2risk.Rd man/getparranges.Rd man/setupHazard.Rd man/Bspline.construct.Rd man/checkSurvivalData.Rd man/hessbasehazard.Rd man/showGrid.Rd man/invtransformweibull.Rd man/posteriorcov.Rd man/summary.mcmc.Rd man/survspat.Rd man/B.Rd man/QuadApprox.Rd man/SPDEprec.Rd man/grid2spts.Rd man/exponentialHaz.Rd man/summary.mcmcspatsurv.Rd man/hazard_PP.Rd man/simsurv.Rd man/inference.control.Rd man/nextStep.Rd man/estimateY.Rd man/PsplineHaz.Rd man/plotsurv.Rd man/densityquantile.Rd man/derivindepGaussianpriorST.Rd man/polyadd.Rd man/cumbasehazard.Rd man/omegapriorGauss.Rd man/gompertzHaz.Rd man/logPosterior.Rd man/grid2spix.Rd man/is.retain.Rd man/print.mcmc.Rd man/betapriorGauss.Rd man/TwoWayHazAdditive.Rd man/Et_PP.Rd man/insert.Rd man/densityquantile.basehazardspec.Rd man/alpha.Rd man/setTxtProgressBar2.Rd man/proposalVariance.Rd man/hasNext.iter.Rd man/transformweibull.Rd man/mcmcpars.Rd man/weibullHaz.Rd man/circulant.numeric.Rd man/logPosterior_polygonal.Rd man/hazardexceedance.Rd man/quantile.mcmcspatsurv.Rd man/Independent.Rd man/grid2spdf.Rd man/textSummary.Rd man/neighOrder.Rd man/basehazard.basehazardspec.Rd man/FFTgrid.Rd man/polymult.Rd man/densityquantile_PP.Rd man/psplineprior.Rd man/circulantij.Rd man/getbb.Rd man/print.mcmcspatsurv.Rd man/omegapriorGaussST.Rd man/proposalVariance_SPDE.Rd man/hasNext.Rd man/GammafromY.Rd man/surv3d.Rd man/derivindepGaussianprior.Rd