wschisq: Weighted sums of non-central chi squared random variables

In sphunif: Uniformity Tests on the Circle, Sphere, and Hypersphere

Weighted sums of non-central chi squared random variables

Description

Approximated density, distribution, and quantile functions for weighted sums of non-central chi squared random variables:

Q_K = \sum_{i = 1}^K w_i \chi^2_{d_i}(\lambda_i),

where w_1, \ldots, w_n are positive weights, d_1, \ldots, d_n are positive degrees of freedom, and \lambda_1, \ldots, \lambda_n are non-negative non-centrality parameters. Also, simulation of Q_K.

Usage

d_wschisq(x, weights, dfs, ncps = 0, method = c("I", "SW", "HBE")[1],
  exact_chisq = TRUE, imhof_epsabs = 1e-06, imhof_epsrel = 1e-06,
  imhof_limit = 10000, grad_method = "simple",
  grad_method.args = list(eps = 1e-07))

p_wschisq(x, weights, dfs, ncps = 0, method = c("I", "SW", "HBE", "MC")[1],
  exact_chisq = TRUE, imhof_epsabs = 1e-06, imhof_epsrel = 1e-06,
  imhof_limit = 10000, M = 10000, MC_sample = NULL)

q_wschisq(u, weights, dfs, ncps = 0, method = c("I", "SW", "HBE", "MC")[1],
  exact_chisq = TRUE, imhof_epsabs = 1e-06, imhof_epsrel = 1e-06,
  imhof_limit = 10000, nlm_gradtol = 1e-06, nlm_iterlim = 1000,
  M = 10000, MC_sample = NULL)

r_wschisq(n, weights, dfs, ncps = 0)

cutoff_wschisq(thre = 1e-04, weights, dfs, ncps = 0, log = FALSE,
  x_tail = NULL)

Arguments

x	vector of quantiles.
weights	vector with the positive weights of the sum. Must have the same length as dfs.
dfs	vector with the positive degrees of freedom of the chi squared random variables. Must have the same length as weights.
ncps	non-centrality parameters. Either 0 (default) or a vector with the same length as weights.
method	method for approximating the density, distribution, or quantile function. Must be "I" (Imhof), "SW" (Satterthwaite–Welch), "HBE" (Hall–Buckley–Eagleson), or "MC" (Monte Carlo; only for distribution or quantile functions). Defaults to "I".
exact_chisq	if weights and dfs have length one, shall the Chisquare functions be called? Otherwise, the approximations are computed for this exact case. Defaults to TRUE.
imhof_epsabs, imhof_epsrel, imhof_limit	precision parameters passed to imhof's epsabs, epsrel, and limit, respectively. They default to 1e-6, 1e-6, and 1e4.
grad_method, grad_method.args	numerical differentiation parameters passed to grad's method and method.args, respectively. They default to "simple", and list(eps = 1e-7) (better precision than imhof_epsabs to avoid numerical artifacts).
M	number of Monte Carlo samples for approximating the distribution if method = "MC". Defaults to 1e4.
MC_sample	if provided, it is employed when method = "MC". If not, it is computed internally.
u	vector of probabilities.
nlm_gradtol, nlm_iterlim	convergence control parameters passed to nlm's gradtol and iterlim, respectively. They default to 1e-6 and 1e3.
n	sample size.
thre	vector with the error thresholds of the tail probability and mean/variance explained by the first terms of the series. Defaults to 1e-4. See details.
log	are weights and dfs given in log-scale? Defaults to FALSE.
x_tail	scalar evaluation point for determining the upper tail probability. If NULL, set to the 0.90 quantile of the whole series, computed by the "HBE" approximation.

Details

Four methods are implemented for approximating the distribution of a weighted sum of chi squared random variables:

• "I": Imhof's approximation (Imhof, 1961) for the evaluation of the distribution function. If this method is selected, the function is simply a wrapper to imhof from the CompQuadForm package (Duchesne and Lafaye De Micheaux, 2010).

• "SW": Satterthwaite–Welch (Satterthwaite, 1946; Welch, 1938) approximation, consisting in matching the first two moments of Q_K with a gamma distribution.

• "HBE": Hall–Buckley–Eagleson (Hall, 1983; Buckley and Eagleson, 1988) approximation, consisting in matching the first three moments of Q_K with a gamma distribution.

• "MC": Monte Carlo approximation using the empirical cumulative distribution function with M simulated samples.

The Imhof method is exact up to the prescribed numerical accuracy. It is also the most time-consuming method. The density and quantile functions for this approximation are obtained by numerical differentiation and inversion, respectively, of the approximated distribution.

For the methods based on gamma matching, the GammaDist density, distribution, and quantile functions are invoked. The Hall–Buckley–Eagleson approximation tends to overperform the Satterthwaite–Welch approximation.

The Monte Carlo method is relatively inaccurate and slow, but serves as an unbiased reference of the true distribution function. The inversion of the empirical cumulative distribution is done by quantile.

An empirical comparison of these and other approximation methods is given in Bodenham and Adams (2016).

cutoff_wschisq removes NAs/NaNs in weights or dfs with a message. The threshold thre ensures that the tail probability of the truncated and whole series differ less than thre at x_tail, or that thre is the proportion of the mean/variance of the whole series that is not retained. The (upper) tail probabilities for evaluating truncation are computed using the Hall–Buckley–Eagleson approximation at x_tail.

Value

• d_wschisq: density function evaluated at x, a vector.

• p_wschisq: distribution function evaluated at x, a vector.

• q_wschisq: quantile function evaluated at u, a vector.

• r_wschisq: a vector of size n containing a random sample.

• cutoff_wschisq: a data frame with the indexes up to which the truncated series explains the tail probability with absolute error thre, or the proportion of the mean/variance of the whole series that is not explained by the truncated series.

Author(s)

Eduardo García-Portugués and Paula Navarro-Esteban.

References

Bodenham, D. A. and Adams, N. M. (2016). A comparison of efficient approximations for a weighted sum of chi-squared random variables. Statistics and Computing, 26(4):917–928. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1007/s11222-015-9583-4")}

Buckley, M. J. and Eagleson, G. K. (1988). An approximation to the distribution of quadratic forms in normal random variables. Australian Journal of Statistics, 30(1):150–159. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1111/j.1467-842X.1988.tb00471.x")}

Duchesne, P. and Lafaye De Micheaux, P. (2010) Computing the distribution of quadratic forms: Further comparisons between the Liu–Tang–Zhang approximation and exact methods. Computational Statistics and Data Analysis, 54(4):858–862. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.csda.2009.11.025")}

Hall, P. (1983). Chi squared approximations to the distribution of a sum of independent random variables. Annals of Probability, 11(4):1028–1036. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1214/aop/1176993451")}

Imhof, J. P. (1961). Computing the distribution of quadratic forms in normal variables. Biometrika, 48(3/4):419–426. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.2307/2332763")}

Satterthwaite, F. E. (1946). An approximate distribution of estimates of variance components. Biometrics Bulletin, 2(6):110–114. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.2307/3002019")}

Welch, B. L. (1938). The significance of the difference between two means when the population variances are unequal. Biometrika, 29(3/4):350–362. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.2307/2332010")}

Examples

# Plotting functions for the examples
add_approx_dens <- function(x, dfs, weights, ncps) {

  lines(x, d_wschisq(x, weights = weights, dfs = dfs, ncps = ncps,
                     method = "SW", exact_chisq = FALSE), col = 3)
  lines(x, d_wschisq(x, weights = weights, dfs = dfs, ncps = ncps,
                     method = "HBE", exact_chisq = FALSE), col = 4)
  lines(x, d_wschisq(x, weights = weights, dfs = dfs, ncps = ncps,
                     method = "I", exact_chisq = TRUE), col = 2)
  legend("topright", legend = c("True", "SW", "HBE", "I"), lwd = 2,
         col = c(1, 3:4, 2))

}
add_approx_distr <- function(x, dfs, weights, ncps, ...) {

  lines(x, p_wschisq(x, weights = weights, dfs = dfs, ncps = ncps,
                     method = "SW", exact_chisq = FALSE), col = 3)
  lines(x, p_wschisq(x, weights = weights, dfs = dfs, ncps = ncps,
                     method = "HBE", exact_chisq = FALSE), col = 4)
  lines(x, p_wschisq(x, weights = weights, dfs = dfs, ncps = ncps,
                     method = "MC", exact_chisq = FALSE), col = 5,
                     type = "s")
  lines(x, p_wschisq(x, weights = weights, dfs = dfs, ncps = ncps,
                     method = "I", exact_chisq = TRUE), col = 2)
  legend("bottomright", legend = c("True", "SW", "HBE", "MC", "I"), lwd = 2,
         col = c(1, 3:5, 2))

}
add_approx_quant <- function(u, dfs, weights, ncps, ...) {

  lines(u, q_wschisq(u, weights = weights, dfs = dfs, ncps = ncps,
                     method = "SW", exact_chisq = FALSE), col = 3)
  lines(u, q_wschisq(u, weights = weights, dfs = dfs, ncps = ncps,
                     method = "HBE", exact_chisq = FALSE), col = 4)
  lines(u, q_wschisq(u, weights = weights, dfs = dfs, ncps = ncps,
                     method = "MC", exact_chisq = FALSE), col = 5,
                     type = "s")
  lines(u, q_wschisq(u, weights = weights, dfs = dfs, ncps = ncps,
                     method = "I", exact_chisq = TRUE), col = 2)
  legend("topleft", legend = c("True", "SW", "HBE", "MC", "I"), lwd = 2,
         col = c(1, 3:5, 2))

}

# Validation plots for density, distribution, and quantile functions
u <- seq(0.01, 0.99, l = 100)
old_par <- par(mfrow = c(1, 3))

# Case 1: 1 * ChiSq_3(0) + 1 * ChiSq_3(0) = ChiSq_6(0)
weights <- c(1, 1)
dfs <- c(3, 3)
ncps <- 0
x <- seq(-1, 30, l = 100)
main <- expression(1 * chi[3]^2 * (0) + 1 * chi[3]^2 * (0))
plot(x, dchisq(x, df = 6), type = "l", main = main, ylab = "Density")
add_approx_dens(x = x, weights = weights, dfs = dfs, ncps = ncps)
plot(x, pchisq(x, df = 6), type = "l", main = main, ylab = "Distribution")
add_approx_distr(x = x, weights = weights, dfs = dfs, ncps = ncps)
plot(u, qchisq(u, df = 6), type = "l", main = main, ylab = "Quantile")
add_approx_quant(u = u, weights = weights, dfs = dfs, ncps = ncps)

# Case 2: 2 * ChiSq_3(1) + 1 * ChiSq_6(0.5) + 0.5 * ChiSq_12(0.25)
weights <- c(2, 1, 0.5)
dfs <- c(3, 6, 12)
ncps <- c(1, 0.5, 0.25)
x <- seq(0, 70, l = 100)
main <- expression(2 * chi[3]^2 * (1)+ 1 * chi[6]^2 * (0.5) +
                   0.5 * chi[12]^2 * (0.25))
samp <- r_wschisq(n = 1e4, weights = weights, dfs = dfs, ncps = ncps)
hist(samp, breaks = 50, freq = FALSE, main = main, ylab = "Density",
     xlim = range(x), xlab = "x"); box()
add_approx_dens(x = x, weights = weights, dfs = dfs, ncps = ncps)
plot(x, ecdf(samp)(x), main = main, ylab = "Distribution", type = "s")
add_approx_distr(x = x, weights = weights, dfs = dfs, ncps = ncps)
plot(u, quantile(samp, probs = u), type = "s", main = main,
     ylab = "Quantile")
add_approx_quant(u = u, weights = weights, dfs = dfs, ncps = ncps)

# Case 3: \sum_{k = 1}^K k^(-3) * ChiSq_{5k}(1 / k^2)
K <- 1e2
weights<- 1 / (1:K)^3
dfs <- 5 * 1:K
ncps <- 1 / (1:K)^2
x <- seq(0, 25, l = 100)
main <- substitute(sum(k^(-3) * chi[5 * k]^2 * (1 / k^2), k == 1, K),
                   list(K = K))
samp <- r_wschisq(n = 1e4, weights = weights, dfs = dfs, ncps = ncps)
hist(samp, breaks = 50, freq = FALSE, main = main, ylab = "Density",
     xlim = range(x), xlab = "x"); box()
add_approx_dens(x = x, weights = weights, dfs = dfs, ncps = ncps)
plot(x, ecdf(samp)(x), main = main, ylab = "Distribution", type = "s")
add_approx_distr(x = x, weights = weights, dfs = dfs, ncps = ncps)
plot(u, quantile(samp, probs = u), type = "s", main = main,
     ylab = "Quantile")
add_approx_quant(u = u, weights = weights, dfs = dfs, ncps = ncps)
par(old_par)

# Cutoffs for infinite series of the last example
K <- 1e7
log_weights<- -3 * log(1:K)
log_dfs <- log(5) + log(1:K)
(cutoff <- cutoff_wschisq(thre = 10^(-(1:4)), weights = log_weights,
                          dfs = log_dfs, log = TRUE))

# Approximation
x <- seq(0, 25, l = 100)
l <- length(cutoff$mean)
main <- expression(sum(k^(-3) * chi[5 * k]^2, k == 1, K))
col <- viridisLite::viridis(l)
plot(x, d_wschisq(x, weights = exp(log_weights[1:cutoff$mean[l]]),
                  dfs = exp(log_dfs[1:cutoff$mean[l]])), type = "l",
     ylab = "Density", col = col[l], lwd = 3)
for(i in rev(seq_along(cutoff$mean)[-l])) {
  lines(x, d_wschisq(x, weights = exp(log_weights[1:cutoff$mean[i]]),
                     dfs = exp(log_dfs[1:cutoff$mean[i]])), col = col[i])
}
legend("topright", legend = paste0(rownames(cutoff), " (", cutoff$mean, ")"),
       lwd = 2, col = col)

sphunif documentation built on May 29, 2024, 4:19 a.m.