Nothing
test_that("blank test", {
expect_null(NULL)
})
test_local <- FALSE # FALSE for CRAN
if (test_local) {
set.seed(1)
# SPMODEL PACKAGE NEEDS TO BE INSTALLED VIA DEVTOOLS::INSTALL() BEFORE RUNNING TESTS IF THOSE TESTS HAVE PARALLELIZATION
load(file = system.file("extdata", "exdata.rda", package = "spmodel"))
load(file = system.file("extdata", "exdata_M.rda", package = "spmodel"))
load(file = system.file("extdata", "exdata_poly.rda", package = "spmodel"))
test_that("the model runs for exponential", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for exponential (partition group)", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", partition_factor = ~group), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml", partition_factor = ~group), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml", partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml", partition_factor = ~group), NA)
}
})
test_that("the model runs for exponential (random group)", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~group), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml", random = ~group), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml", random = ~group), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml", random = ~group), NA)
}
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
randcov_initial_val <- randcov_initial(group = 1)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml", random = ~group, randcov_initial = randcov_initial_val), NA)
})
test_that("the model runs for exponential (random and subgroup)", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~ group + subgroup), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml", random = ~ group + subgroup), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml", random = ~ group + subgroup), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml", random = ~group), NA)
}
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
randcov_initial_val <- randcov_initial(group = 1)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml", random = ~ group + subgroup, randcov_initial = randcov_initial_val), NA)
})
test_that("the model runs for exponential (random nested subgroup)", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~ group / subgroup), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml", random = ~ group / subgroup), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml", random = ~ group / subgroup), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml", random = ~ group / subgroup), NA)
}
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
randcov_initial_val <- randcov_initial(group = 1)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml", random = ~ group / subgroup, randcov_initial = randcov_initial_val), NA)
})
test_that("the model runs for exponential (random and partitioning)", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~group, partition_factor = ~group), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml", random = ~group, partition_factor = ~group), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml", random = ~group, partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml", random = ~group, partition_factor = ~group), NA)
}
})
test_that("the model runs for anisotropy", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", anisotropy = TRUE
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", anisotropy = TRUE
), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_initial = spcov_initial_val, estmethod = "reml", anisotropy = TRUE
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_initial = spcov_initial_val, estmethod = "ml", anisotropy = TRUE
), NA)
}
})
test_that("the model runs for and random effects", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", anisotropy = TRUE, random = ~group
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", anisotropy = TRUE, random = ~group
), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_initial = spcov_initial_val, estmethod = "reml", anisotropy = TRUE, random = ~group
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_initial = spcov_initial_val, estmethod = "ml", anisotropy = TRUE, random = ~group
), NA)
}
})
test_that("the model runs for and partitioning", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", anisotropy = TRUE, partition_factor = ~group
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", anisotropy = TRUE, partition_factor = ~group
), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_initial = spcov_initial_val, estmethod = "reml", anisotropy = TRUE, partition_factor = ~group
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_initial = spcov_initial_val, estmethod = "ml", anisotropy = TRUE, partition_factor = ~group
), NA)
}
})
test_that("the model runs for and random effects and partitioning", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", anisotropy = TRUE, random = ~group, partition_factor = ~group
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", anisotropy = TRUE, random = ~group, partition_factor = ~group
), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_initial = spcov_initial_val, estmethod = "reml",
anisotropy = TRUE, random = ~group, partition_factor = ~group
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_initial = spcov_initial_val, estmethod = "ml",
anisotropy = TRUE, random = ~group, partition_factor = ~group
), NA)
}
})
test_that("the model runs for exponential and missing data", {
spcov_type <- spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
}
})
test_that("the model runs for exponential (random group) and missing data", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~group), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml", random = ~group), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml", random = ~group), NA)
expect_error(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml", random = ~group), NA)
}
})
test_that("the model runs for big data", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", local = TRUE), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml", local = TRUE), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls", local = TRUE), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl", local = TRUE), NA)
# parallel for REML and ML and no errors for other methods
# CRAN ONLY ALLOWS 2 CORES FOR TESTING
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", local = list(parallel = TRUE, ncores = 2)
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", local = list(parallel = TRUE, ncores = 2)
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-wls", local = list(parallel = TRUE, ncores = 2)
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-cl", local = list(parallel = TRUE, ncores = 2)
), NA)
}
# in case var_adjust default changed to "none"
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", local = list(parallel = TRUE, var_adjust = "none", ncores = 2)
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", local = list(parallel = TRUE, var_adjust = "theoretical", ncores = 2)
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-wls", local = list(parallel = TRUE, var_adjust = "pooled", ncores = 2)
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-cl", local = list(parallel = TRUE, var_adjust = "empirical", ncores = 2)
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", local = list(size = 30)
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", local = list(size = 30)
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-wls", local = list(size = 30)
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-cl", local = list(size = 30)
), NA)
}
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", local = list(groups = 10)
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", local = list(groups = 10)
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-wls", local = list(groups = 10)
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-cl", local = list(groups = 10)
), NA)
}
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", local = list(index = sample(1:4, size = 100, replace = TRUE))
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", local = list(index = sample(1:4, size = 100, replace = TRUE))
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-wls", local = list(index = sample(1:4, size = 100, replace = TRUE))
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-cl", local = list(index = sample(1:4, size = 100, replace = TRUE))
), NA)
}
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", local = list(method = "kmeans")
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", local = list(method = "kmeans")
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-wls", local = list(method = "kmeans")
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-cl", local = list(method = "kmeans")
), NA)
}
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", local = list(var_adjust = "none")
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", local = list(var_adjust = "theoretical")
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-wls", local = list(var_adjust = "empirical")
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-cl", local = list(var_adjust = "pooled")
), NA)
# random effects
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", random = ~group, local = TRUE
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", random = ~group, local = TRUE
), NA)
}
# random effects (nested)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", random = ~ group / subgroup, local = TRUE
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", random = ~ group / subgroup, local = TRUE
), NA)
}
# random effects (x2)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", random = ~ group + subgroup, local = TRUE
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", random = ~ group + subgroup, local = TRUE
), NA)
}
# anisotropy
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", anisotropy = TRUE, local = TRUE
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", anisotropy = TRUE, local = TRUE
), NA)
}
# partitioning
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", partition_factor = ~group, local = TRUE
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", partition_factor = ~group, local = TRUE
), NA)
}
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-wls", partition_factor = ~group, local = TRUE
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "sv-cl", partition_factor = ~group, local = TRUE
), NA)
# random effects partitioning
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", random = ~group, partition_factor = ~group, local = TRUE
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", random = ~group, partition_factor = ~group, local = TRUE
), NA)
}
# random effects anisotropy
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", random = ~group, anisotropy = TRUE, local = TRUE
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", random = ~group, anisotropy = TRUE, local = TRUE
), NA)
}
# partitioning anisotropy
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml", partition_factor = ~group, anisotropy = TRUE, local = TRUE
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml", partition_factor = ~group, anisotropy = TRUE, local = TRUE
), NA)
}
# random effects partitioning anisotropy
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml",
random = ~group, partition_factor = ~group, anisotropy = TRUE, local = TRUE
), NA)
if (test_local) {
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "ml",
random = ~group, partition_factor = ~group, anisotropy = TRUE, local = TRUE
), NA)
}
})
test_that("the model runs for spherical", {
spcov_type <- "spherical"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for gaussian", {
spcov_type <- "gaussian"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for triangular", {
spcov_type <- "triangular"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
# try giving y coordinate
expect_warning(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"))
expect_warning(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"))
})
test_that("the model runs for circular", {
spcov_type <- "circular"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for none", {
spcov_type <- "none"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for ie", {
spcov_type <- "ie"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
mod1 <- splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml")
mod2 <- splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = "none", estmethod = "reml")
expect_equal(as.vector(coef(mod1, "spcov")), as.vector(coef(mod2, "spcov")), tolerance = 0.01)
})
test_that("the model runs for cubic", {
spcov_type <- "cubic"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for pentaspherical", {
spcov_type <- "pentaspherical"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for cosine", {
spcov_type <- "cosine"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
# try giving y coordinate
expect_warning(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"))
expect_warning(splm(y ~ x, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"))
})
test_that("the model runs for wave", {
spcov_type <- "wave"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for jbessel", {
spcov_type <- "jbessel"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for gravity", {
spcov_type <- "gravity"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for rquad", {
spcov_type <- "rquad"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for magnetic", {
spcov_type <- "magnetic"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for matern", {
spcov_type <- "matern"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for cauchy", {
spcov_type <- "cauchy"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for pexponential", {
spcov_type <- "pexponential"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
})
test_that("the model runs for all sv-wls weights", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls", weights = "cressie"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls", weights = "cressie-dr"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls", weights = "cressie-nopairs"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls", weights = "cressie-dr-nopairs"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls", weights = "pairs"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls", weights = "pairs-invd"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls", weights = "pairs-invrd"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls", weights = "ols"), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls", weights = "cressie"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls", weights = "cressie-dr"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls", weights = "cressie-nopairs"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls", weights = "cressie-dr-nopairs"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls", weights = "pairs"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls", weights = "pairs-invd"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls", weights = "pairs-invrd"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls", weights = "ols"), NA)
})
test_that("the model runs for certain known parameter assignments", {
# 3 param geo
spcov_initial_val <- spcov_initial("exponential", de = 1, ie = 1, range = 1, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl"), NA)
randcov_initial_val <- randcov_initial(group = 1, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, random = ~group, randcov_initial = randcov_initial_val), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml", random = ~group, randcov_initial = randcov_initial_val), NA)
spcov_initial_val <- spcov_initial("exponential", de = 1, ie = 1, range = 1, rotate = 2, scale = 0.5, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, random = ~group, randcov_initial = randcov_initial_val), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml", random = ~group, randcov_initial = randcov_initial_val), NA)
# 2 param geo
spcov_initial_val <- spcov_initial("exponential", de = 1, ie = 0, range = 1, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl"), NA)
randcov_initial_val <- randcov_initial(group = 1, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, random = ~group, randcov_initial = randcov_initial_val), NA)
spcov_initial_val <- spcov_initial("exponential", de = 1, ie = 0, range = 1, rotate = 2, scale = 0.5, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, random = ~group, randcov_initial = randcov_initial_val), NA)
# 4 param geo
spcov_initial_val <- spcov_initial("matern", de = 1, ie = 1, range = 1, extra = 1, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl"), NA)
randcov_initial_val <- randcov_initial(group = 1, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, random = ~group, randcov_initial = randcov_initial_val), NA)
spcov_initial_val <- spcov_initial("matern", de = 1, ie = 1, range = 1, extra = 1, rotate = 2, scale = 0.5, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, random = ~group, randcov_initial = randcov_initial_val), NA)
spcov_initial_val <- spcov_initial("matern", de = 1, ie = 0, range = 1, extra = 1, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl"), NA)
randcov_initial_val <- randcov_initial(group = 1, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, random = ~group, randcov_initial = randcov_initial_val), NA)
spcov_initial_val <- spcov_initial("matern", de = 1, ie = 0, range = 1, rotate = 2, extra = 1, scale = 0.5, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl"), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, random = ~group, randcov_initial = randcov_initial_val), NA)
# 3 param auto
spcov_initial_val <- spcov_initial("car", de = 1, ie = 0, range = 0.5, extra = 1, known = "given")
expect_error(spautor(y ~ x, exdata_poly, spcov_initial = spcov_initial_val), NA)
randcov_initial_val <- randcov_initial(group = 1, known = "given")
expect_error(spautor(y ~ x, exdata_poly, spcov_initial = spcov_initial_val, random = ~group, randcov_initial = randcov_initial_val), NA)
spcov_initial_val <- spcov_initial("car", de = 1, ie = 0, range = 0.5, extra = 1, rotate = 2, scale = 0.5, known = "given")
expect_error(spautor(y ~ x, exdata_poly, spcov_initial = spcov_initial_val), NA)
expect_error(spautor(y ~ x, exdata_poly, spcov_initial = spcov_initial_val, random = ~group, randcov_initial = randcov_initial_val), NA)
spcov_initial_val <- spcov_initial("car", de = 1, ie = 1, range = 0.5, extra = 1, known = "given")
expect_error(spautor(y ~ x, exdata_poly, spcov_initial = spcov_initial_val), NA)
randcov_initial_val <- randcov_initial(group = 1, known = "given")
expect_error(spautor(y ~ x, exdata_poly, spcov_initial = spcov_initial_val, random = ~group, randcov_initial = randcov_initial_val), NA)
spcov_initial_val <- spcov_initial("car", de = 1, ie = 1, range = 0.5, rotate = 2, extra = 1, scale = 0.5, known = "given")
expect_error(spautor(y ~ x, exdata_poly, spcov_initial = spcov_initial_val), NA)
expect_error(spautor(y ~ x, exdata_poly, spcov_initial = spcov_initial_val, random = ~group, randcov_initial = randcov_initial_val), NA)
# 3 param geo w/ partition factors
spcov_initial_val <- spcov_initial("exponential", de = 1, ie = 1, range = 1, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml", partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls", partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl", partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls", partition_factor = ~group, local = TRUE), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl", partition_factor = ~group, local = TRUE), NA)
randcov_initial_val <- randcov_initial(group = 1, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, random = ~group, randcov_initial = randcov_initial_val, partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml", random = ~group, randcov_initial = randcov_initial_val, partition_factor = ~group), NA)
spcov_initial_val <- spcov_initial("exponential", de = 1, ie = 1, range = 1, rotate = 2, scale = 0.5, known = "given")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml", partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls", partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl", partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls", partition_factor = ~group, local = TRUE), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl", partition_factor = ~group, local = TRUE), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, random = ~group, randcov_initial = randcov_initial_val, partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord, estmethod = "ml", random = ~group, randcov_initial = randcov_initial_val, partition_factor = ~group), NA)
})
test_that("the model runs for sf and sp objects", {
# point data
exdata_sf <- sf::st_as_sf(exdata, coords = c("xcoord", "ycoord"), crs = 5070)
exdata_sf_geo <- sf::st_transform(exdata_sf, crs = 4326)
exdata_sf_NA <- sf::st_as_sf(exdata, coords = c("xcoord", "ycoord"), crs = NA)
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata_sf, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata_sf, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata_sf, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata_sf, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_type <- "none"
expect_error(splm(y ~ x, exdata_sf, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata_sf, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata_sf, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata_sf, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_type <- "matern"
expect_error(splm(y ~ x, exdata_sf, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata_sf, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata_sf, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata_sf, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
# polygon data
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata_poly, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata_poly, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata_poly, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata_poly, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_type <- "none"
expect_error(splm(y ~ x, exdata_poly, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata_poly, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata_poly, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata_poly, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
spcov_type <- "matern"
expect_error(splm(y ~ x, exdata_poly, spcov_type = spcov_type, estmethod = "reml"), NA)
expect_error(splm(y ~ x, exdata_poly, spcov_type = spcov_type, estmethod = "ml"), NA)
expect_error(splm(y ~ x, exdata_poly, spcov_type = spcov_type, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata_poly, spcov_type = spcov_type, estmethod = "sv-cl"), NA)
# warning when geographic
expect_warning(splm(y ~ x, exdata_sf_geo, spcov_type = spcov_type, estmethod = "reml"))
expect_warning(splm(y ~ x, exdata_sf_NA, spcov_type = spcov_type, estmethod = "reml"), NA)
})
test_that("extra covr checks", {
# random effects with cov_initial_search generics for 4 parameter families
spcov_type <- "matern"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~group), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, random = ~group, partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, random = ~group, anisotropy = TRUE), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml", random = ~group), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml", random = ~group, partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml", random = ~group, anisotropy = TRUE), NA)
# random effects with cov_initial_search generics for 1 parameter families
spcov_type <- "none"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~group), NA)
spcov_initial_val <- spcov_initial(spcov_type = spcov_type, de = 1, ie = 1, range = 1, known = "de")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "reml", random = ~group), NA)
# anisotropy for sv approaches
spcov_initial_val <- spcov_initial(spcov_type = "exponential", rotate = 0.5, scale = 0.5, known = "given")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"), NA)
# partition factors for sv approaches
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata, spcov_type, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-wls", partition_factor = ~group), NA)
expect_error(splm(y ~ x, exdata, spcov_type, xcoord = xcoord, ycoord = ycoord, estmethod = "sv-cl", partition_factor = ~group), NA)
# more than one random effect
expect_error(splm(y ~ x, exdata, "exponential", xcoord = xcoord, ycoord = ycoord, random = ~ group + subgroup), NA)
expect_error(splm(y ~ x, exdata, "matern", xcoord = xcoord, ycoord = ycoord, random = ~ group + subgroup), NA)
expect_error(splm(y ~ x, exdata, "none", xcoord = xcoord, ycoord = ycoord, random = ~ group + subgroup), NA)
# anisotropy resets itself based on spcov initial
spcov_initial_val <- spcov_initial(spcov_type = "exponential", rotate = 0, scale = 1, known = "given")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, anisotropy = TRUE), NA)
# var adjust with anisotropy and random effects and partition factors
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml",
anisotropy = TRUE, local = list(var_adjust = "theoretical")
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml",
random = ~group, local = list(var_adjust = "theoretical")
), NA)
expect_error(splm(y ~ x, exdata,
xcoord = xcoord, ycoord = ycoord,
spcov_type = spcov_type, estmethod = "reml",
partition_factor = ~group, local = list(var_adjust = "theoretical")
), NA)
})
test_that("examples run", {
spmod <- splm(y ~ x, exdata, "exponential", xcoord, ycoord)
expect_output(print(spmod))
expect_error(summary(spmod), NA)
expect_error(tidy(spmod), NA)
# different estimation method
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, estmethod = "sv-wls"), NA)
# anisotropy
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, anisotropy = TRUE), NA)
# random effects
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, random = ~group), NA)
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, random = ~ (x | group) + (x | subgroup)), NA)
# partition factor
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, partition_factor = ~group), NA)
# big data
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, local = TRUE), NA)
## parallel
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, local = list(parallel = TRUE, ncores = 2)), NA)
# combining
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, anisotropy = TRUE, random = ~group, partition_factor = ~group, local = TRUE), NA)
# spcov_initial
spcov_initial_val <- spcov_initial("exponential", ie = 0, known = "ie")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord), NA)
# randcov_initial ("group" is shorthand for "1 | group"))
randcov_initial_val <- randcov_initial(1, nm = "group", known = "group")
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, random = ~group, randcov_initial = randcov_initial_val), NA)
})
test_that("errors occur", {
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, partition_factor = ~ group + subgroup))
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, local = list(method = "xyz")))
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, local = list(var_adjust = "xyz")))
exdata2 <- exdata
exdata2[1, "xcoord"] <- NA
expect_error(splm(y ~ x, exdata2, "exponential", xcoord, ycoord))
expect_error(suppressWarnings(splm(y ~ as.factor(x) + group, exdata, "exponential", xcoord, ycoord)))
expect_error(splm(y ~ x, exdata, "exponential", xcoord = ycoord), NA) # changing to ycoord2 works
expect_error(splm(y ~ x, exdata, "exponential", ycoord = xcoord))
expect_error(splm(y ~ x, exdata, "xyz", xcoord, ycoord))
# spcov_initial_val <- spcov_initial("xyz")
# expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord))
expect_error(splm(y ~ x, exdata, "car", xcoord, ycoord))
spcov_initial_val <- spcov_initial("car")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord))
expect_error(splm(y ~ x, exdata, "sar", xcoord, ycoord))
spcov_initial_val <- spcov_initial("sar")
expect_error(splm(y ~ x, exdata, spcov_initial = spcov_initial_val, xcoord = xcoord, ycoord = ycoord))
exdata3 <- exdata
exdata3$y <- as.character(exdata3$y)
expect_error(splm(y ~ x, exdata3, "exponential", xcoord, ycoord))
expect_error(splm(as.character(y) ~ x, exdata, "exponential", xcoord, ycoord))
exdata3$y <- as.factor(exdata3$y)
expect_error(splm(y ~ x, exdata3, "exponential", xcoord, ycoord))
expect_error(splm(as.factor(y) ~ x, exdata, "exponential", xcoord, ycoord))
exdata3$xcoord <- as.character(exdata3$xcoord)
expect_error(splm(y ~ x, exdata3, "exponential", xcoord, ycoord))
exdata3$ycoord <- as.character(exdata3$ycoord)
expect_error(splm(y ~ x, exdata3, "exponential", xcoord, ycoord))
exdata3$xcoord <- as.numeric(exdata3$xcoord)
expect_error(splm(y ~ x, exdata3, "exponential", xcoord, ycoord))
expect_error(splm(y ~ x, exdata, "exponential", xyz, ycoord))
expect_error(splm(y ~ x, exdata, "exponential", "xyz", ycoord))
expect_error(splm(y ~ x, exdata, "exponential", xcoord, xyz))
expect_error(splm(y ~ x, exdata, "exponential", xcoord, "xyz"))
exdata4 <- exdata
exdata4$x2 <- exdata4$x
expect_error(suppressWarnings(splm(y ~ x + x2, exdata4, "exponential", xcoord, ycoord)))
exdata4$x[1] <- NA
expect_error(splm(y ~ x, exdata4, "exponential", xcoord, ycoord))
# anisotropy
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, anisotropy = TRUE, estmethod = "sv-wls"))
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, anisotropy = TRUE, estmethod = "sv-cl"))
spcov_initial_val <- spcov_initial("exponential", rotate = 2)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"))
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"))
spcov_initial_val <- spcov_initial("exponential", scale = 1)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"))
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"))
spcov_initial_val <- spcov_initial("exponential", rotate = 2, scale = 1)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-wls"))
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val, estmethod = "sv-cl"))
# random effects
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, estmethod = "sv-wls", random = ~group))
expect_error(splm(y ~ x, exdata, "exponential", xcoord, ycoord, estmethod = "sv-cl", random = ~group))
})
test_that("messages occur", {
expect_message(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord))
spcov_initial_val <- spcov_initial("exponential")
expect_message(splm(y ~ x, exdata, "exponential", xcoord = xcoord, ycoord = ycoord, spcov_initial = spcov_initial_val))
})
test_that("quoting arguments works", {
spmod1 <- splm(y ~ x, exdata, "exponential", xcoord, ycoord)
spmod1$call <- NULL
spmod2 <- splm(y ~ x, exdata, "exponential", "xcoord", "ycoord")
spmod2$call <- NULL
expect_equal(spmod1, spmod2)
})
test_that("no variance error works", {
exdata$novar <- 1
expect_error(splm(novar ~ x, exdata, "exponential", xcoord, ycoord))
})
test_that("offset works", {
exdata$offset <- 2
exdata$y2 <- exdata$y - exdata$offset
spmod1 <- splm(y ~ x + offset(offset), exdata, "exponential", xcoord, ycoord)
spmod2 <- splm(y2 ~ x, exdata, "exponential", xcoord, ycoord)
expect_equal(fitted(spmod1), fitted(spmod2) + exdata$offset)
})
test_that("the model runs for partition and random effect group if there is an extra factor present", {
spcov_type <- "exponential"
exdata$group2 <- factor(exdata$group)
levels(exdata$group2) <- c(levels(exdata$group2), ".new_group_level")
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", partition_factor = ~group2), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~group2), NA)
spmod <- splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~group2)
expect_equal(0, unname(fitted(spmod, type = "randcov")[["1 | group2"]]["group2.new_group_level"]))
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~group2,
partition_factor = ~group2), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", partition_factor = ~group2, local = TRUE), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~group2, local = TRUE), NA)
spmod <- splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~group2, local = TRUE)
expect_equal(0, unname(fitted(spmod, type = "randcov")[["1 | group2"]]["group2.new_group_level"]))
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", random = ~group2,
partition_factor = ~group, local = TRUE), NA)
})
test_that("emmeans works", {
spcov_type <- "exponential"
spmod <- splm(y ~ x * group, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml")
expect_equal(as.matrix(model.frame(delete.response(terms(spmod)), spmod$obdata)), as.matrix(emmeans::recover_data(spmod)))
expect_error(emmeans::emmeans(spmod, ~ group, by = "x"), NA)
})
test_that("emmeans works missing", {
spcov_type <- "exponential"
spmod <- splm(y ~ x * group, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml")
expect_equal(as.matrix(model.frame(delete.response(terms(spmod)), spmod$obdata)), as.matrix(emmeans::recover_data(spmod)))
expect_error(emmeans::emmeans(spmod, ~ group, by = "x"), NA)
})
test_that("covmatrix errors properly", {
spcov_type <- "exponential"
spmod <- splm(y ~ x * group, exdata_M, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml")
expect_error(covmatrix(spmod, newdata = NULL))
expect_error(covmatrix(spmod, cov_type = "xyz"), NA) # when newdata not specified cov_type silently ignored
expect_error(covmatrix(spmod, newdata = spmod$newdata, cov_type = "xyz"))
})
test_that("range_constrain works", {
spcov_type <- "exponential"
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "reml", range_constrain = TRUE), NA)
expect_error(splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "ml", range_constrain = TRUE), NA)
})
test_that("robust semivariogram works", {
spcov_type <- "exponential"
spmod1 <- splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls")
spmod2 <- splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls", robust = FALSE)
spmod3 <- splm(y ~ x, exdata, xcoord = xcoord, ycoord = ycoord, spcov_type = spcov_type, estmethod = "sv-wls", robust = TRUE)
expect_true(identical(spmod1$esv, spmod2$esv))
expect_true(!identical(spmod1$esv, spmod3$esv))
})
}
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