stepp.subpop: The constructor to create the stsubpop object and generate...

In stepp: Subpopulation Treatment Effect Pattern Plot (STEPP)

The constructor to create the stsubpop object and generate the subpopulations based on the specified stepp window and covariate of interest

Description

This is the constructor function to create a stepp subpopulation object. In addition, it will also generate the stepp subpopulations based on the stepp window and covariate specified.

Usage

stepp.subpop(swin, cov, coltype, coltrt, trts, minsubpops)

Arguments

swin	the stepp window set up for the analysis
cov	the covariate of interest
coltype	variable providing the event type; required only for event-based windows
coltrt	variable providing the treatment indicators; required only for event-based windows
trts	vector containing the treatments list; required only for event-based windows
minsubpops	length-one numeric vector providing the minimum number of subpopulations to generate; required only for event-based windows

Value

It returns the stsubpop object with subpopulations generated.

Author(s)

Wai-Ki Yip

See Also

stwin, stsubpop, stmodelKM, stmodelCI, stmodelGLM, steppes, stmodel, stepp.win, stepp.KM, stepp.CI, stepp.GLM, stepp.test, estimate, generate

Examples

# create a steppp window
win1 <- stepp.win(type="sliding", r1=5,r2=10)

# generate the covariate of interest
Y <- rnorm(100)

# create and generate the stepp subpopulation
sp   <- stepp.subpop(swin=win1, cov=Y)

# event-based windows using the BIG data set
data(bigKM)
rxgroup <- bigKM$trt
time    <- bigKM$time
evt     <- bigKM$event
cov     <- bigKM$ki67

swin_e <- new("stwin", type = "sliding_events", e1 = 10, e2 = 20)
subp_e <- new("stsubpop")
subp_e <- generate(subp_e, win = swin_e, covariate = cov, coltype = evt,
                   coltrt = rxgroup, trts = c(1, 2), minsubpops = 5)
summary(subp_e)

stepp documentation built on June 18, 2022, 5:06 p.m.