Description Usage Arguments Details Value Author(s) References See Also Examples

`devresid`

divides the space-time window into a grid of bins and calculates the deviance residuals within each bin between two competing conditional intensity models.

1 2 3 4 5 | ```
devresid(X, cifunction1, cifunction2, theta1 = NULL, theta2 = NULL,
lambda1 = NULL, lambda2 = NULL, grid = c(10, 10), gf = NULL, algthm1 =
c("cubature", "mc", "miser", "none"), algthm2 = c("cubature", "mc", "miser", "none"),
n = 100, n1.miser = 10000, n2.miser = 10000, tol = 1e-05, maxEval = 0,
absError = 0, ints1 = NULL, ints2 = NULL)
``` |

`X` |
A “ |

`cifunction1` |
A function returning estimates of the conditional intensity at all points in |

`cifunction2` |
A function returning estimates of the conditional intensity at all points in |

`theta1` |
Optional: A vector of parameters to be passed to |

`theta2` |
Optional: A vector of parameters to be passed to |

`lambda1` |
Optional: A vector of conditional intensities based on |

`lambda2` |
Optional: A vector of conditional intensities based on |

`grid` |
A vector representing the number of columns and rows in the grid. |

`gf` |
Optional: A “ |

`algthm1` |
The algorithm used for estimating the integrals in each grid cell for model 1. The three algorithms are “ |

`algthm2` |
The algorithm used for estimating the integrals in each grid cell for model 2. The three algorithms are “ |

`n` |
Initial number of sample points in each grid cell for approximating integrals. The number of sample points are iteratively increased by |

`n1.miser` |
The total number of sample points for estimating all integrals for model 1 if the |

`n2.miser` |
The total number of sample points for estimating all integrals for model 2 if the |

`tol` |
The maximum tolerance. |

`maxEval` |
The maximum number of function evaluations needed (default 0 implies no limit). |

`absError` |
The maximum absolute error tolerated. |

`ints1` |
An optional vector of integrals for model 1. Must be the same length as the number of rows in |

`ints2` |
An optional vector of integrals for model 2. Must be the same length as the number of rows in |

The deviance residuals are the differences in the log-likelihoods of model 1 vs. model 2 within each space-time bin, denoted here as *B_i* (see Wong and Schoenberg (2010)). The deviance residual is given by

*R_{D}(B_i) = ∑_{i:(x_{i})\in B_{i}} log \hat{λ}_{1}(x_{i}) - \int_{B_{i}} \hat{λ}_{1}(x_{i}) dx - ≤ft(∑_{i:(x_{i})\in B_{i}} log \hat{λ}_{2}(x_{i}) - \int_{B_{i}} \hat{λ}_{2}(x_{i}) dx\right),*

where *lambda_hat* is the fitted conditional intensity model.

The conditional intensity functions, `cifunction1`

and `cifunction2`

, should take `X`

as their first argument, and an optional `theta`

as their second argument, and return a vector of conditional intensity estimates with length equal to the number of points in `X`

, i.e. the length of `X$x`

. Both `cifunction1`

and `cifunction2`

are required. `lambda1`

and `lambda2`

are optional, and if passed will eliminate the need for `devresid`

to calculate the conditional intensities at each observed point in `X`

.

The integrals in *R(B_{i})* are approximated using one of three algorithms: the `adaptIntegrate`

function from the `cubature`

pakcage, a simple Monte Carlo (`mc`

) algorithm, or the `miser`

algorithm. The default is `cubature`

and should be the fastest approximation. The approximation continues until either the maximum number of evaluations is reached, the error is less than the absolute error, or is less than the tolerance times the integral.

The simple Monte Carlo iteratively adds `n`

sample points to each grid cell to approximate the integral, and the iteration stops when some threshold in the accuracy of the approximation is reached. The MISER algorithm samples a total number of `n1.miser`

and/or `n2.miser`

points in a recursive way, sampling the points in locations that have the highest variance. This part can be very slow and the approximations can be very inaccurate. For highest accuracy these algorithms will require a very large `n`

or `n1.miser`

/`n2.miser`

depending on the complexity of the conditional intensity functions (some might say ~1 billion sample points are needed for a good approximation). Passing the argument `ints1`

and/or `ints2`

eliminates the need for approximating the integrals using either of these two algorithms.

Passing `gf`

will eliminate the need for `devresid`

to create a “`stgrid`

” object. If neither `grid`

or `gf`

is specified, the default `grid`

is 10 by 10.

Prints to the screen the number of simulated points used to approximate the integrals.

Outputs an object of class “`devresid`

”, which is a list of

`X ` |
An object of class “ |

`grid ` |
An object of class “ |

`residuals ` |
A vector of deviance residuals. The order of the residuals corresponds with the order of the bins in |

The following elements are named by model number, e.g. n.1, n.2, integral.1, integral.2, etc..

`n` |
Total number of points used for approximating all integrals. |

`integral` |
Vector of actual integral approximations in each grid cell. |

`mean.lambda` |
Vector of the approximate final mean of lambda in each grid cell. |

`sd.lambda` |
Vector of the approximate standard deviation of lambda in each grid cell. |

If the `miser`

algorithm is selected, the following is also returned:

`app.pts` |
A data frame of the x,y, and t coordinates of a sample of 10,000 of the sampled points for integral approximation, along with the value of lambda (l). |

Robert Clements

Wong, K., Schoenberg, F.P. "On mainshock focal mechanisms and the spatial distribution of aftershocks", Bulletin of the Seismological Society of America, In review.

Clements, R.A., Schoenberg, F.P., and Schorlemmer, D. (2011) Residual analysis methods for space-time point processes with applications to earthquake forecast models in California. *Annals of Applied Statistics,* **5**, Number 4, 2549–2571.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | ```
#===> load simulated data <===#
data(simdata)
X <- stpp(simdata$x, simdata$y, simdata$t)
#===> define two conditional intensity functions <===#
ci1 <- function(X, theta){theta*exp(-2*X$x - 2*X$y - 2*X$t)} #correct model
ci2 <- function(X, theta = NULL){rep(250, length(X$x))} #homogeneous Poisson model
## Not run:
deviance <- devresid(X, ci1, ci2, theta1 = 3000)
#===> plot results <===#
plot(deviance)
## End(Not run)
``` |

stppResid documentation built on May 29, 2017, 3:48 p.m.

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.