Description Usage Arguments Details Value Author(s) See Also Examples
tessdev
divides the space-time window into cells using a Voronoi tessellation and calculates the deviance residuals within each cell between two competing conditional intensity models.
1 2 3 4 |
X |
A “ |
cifunction1 |
A function returning estimates of the conditional intensity at all points in |
cifunction2 |
A function returning estimates of the conditional intensity at all points in |
theta1 |
Optional: A vector of parameters to be passed to |
theta2 |
Optional: A vector of parameters to be passed to |
lambda1 |
Optional: A vector of conditional intensities based on |
lambda2 |
Optional: A vector of conditional intensities based on |
algthm1 |
The algorithm used for estimating the integrals in each cell for model 1. The three algorithms are “ |
algthm2 |
The algorithm used for estimating the integrals in each cell for model 2. The three algorithms are “ |
n |
Initial number of sample points in each cell for approximating integrals. The number of sample points are iteratively increased by |
n1.miser |
The total number of sample points for estimating all integrals for model 1 if the |
n2.miser |
The total number of sample points for estimating all integrals for model 2 if the |
ints1 |
An optional vector of integrals for model 1. Must be the same length as the number of tessellation cells, and each element of |
ints2 |
An optional vector of integrals for model 2. Must be the same length as the number of tessellation cells, and each element of |
The tessellation deviance residuals are the differences in the tessellation residuals of model 1 vs. model 2 within each Voronoi tessellation cell, denoted here as V_i. The tessellation deviance residual is given by
R_{TD}(V_{i}) = ≤ft(1 - \int_{V_{i}}\hat{λ}_{1}(x)dx\right)/√{\int_{V_{i}}\hat{λ}_{1}(x)dx}-≤ft(1 - \int_{V_{i}}\hat{λ}_{2}(x)dx\right)/√{\int_{V_{i}}\hat{λ}_{2}(x)dx},
where lambda_hat is the fitted conditional intensity model.
The conditional intensity functions, cifunction1
and cifunction2
, should take X
as their first argument, and an optional theta
as their second argument, and return a vector of conditional intensity estimates with length equal to the number of points in X
, i.e. the length of X$x
. Both cifunction1
and cifunction2
are required. lambda1
and lambda2
are optional, and if passed will eliminate the need for devresid
to calculate the conditional intensities at each observed point in X
.
The integrals in R_{TD}(V_{i}) are approximated using one of two algorithms: a simple Monte Carlo (mc
) algorithm, or the MISER algorithm. The simple Monte Carlo iteratively adds n
sample points to each tessellation cell to approximate the integral, and the iteration stops when some threshold in the accuracy of the approximation is reached. The MISER algorithm samples a total number of n.miser
points in a recursive way, sampling the points in locations that have the highest variance. This part can be very slow and the approximations can be very inaccurate. For highest accuracy these algorithms will require a very large n
or n.miser
depending on the complexity of the conditional intensity functions (some might say ~1 billion sample points are needed for a good approximation).
Passing the arguments ints1
and/or ints2
eliminates the need for approximating the integrals using either of the two algorithms here. However, the tile.list
must first be obtained in order to assure that each element of ints1
and/or ints2
corresponds to the correct cell. The tile.list
can be obtained, either by using the deldir
function separately, or by using tessresid
with one of the included algorithms first (the tile.list
is returned along with the residuals). tessresid
can then be called again with ints1
and/or ints2
included and algthm
= “none
”.
Note that if miser
is selected, and if the points in the point pattern are very densely clustered, the integral in some cells may end up being approximated based on only the observed point in the point pattern that is contained in that cell. This happens because the cells in these clusters of points will be very small, and so it may be likely that sampled points based on the MISER algorithm will miss these cells entirely. For this reason, the simple Monte Carlo algorithm might be preferred.
Prints to the screen the number of simulated points used to approximate the integrals.
Outputs an object of class “tessdev
”, which is a list of
X |
An object of class “ |
tile.list |
An object of class “ |
residuals |
A vector of tessellation deviance residuals. The order of the residuals corresponds with the order of the cells (tiles) in |
If algthm
= “mc
”, then a list of the following elements are also included for each model that uses the mc
algorithm:
n |
Vector of the total number of points used for approximating integrals. |
integral |
Vector of actual integral approximations in each grid cell. |
mean.lambda |
Vector of the approximate final mean of lambda in each grid cell. |
sd.lambda |
Vector of the approximate standard deviation of lambda in each grid cell. |
If the miser
algorithm is selected, then a list of the following elements are also included for each model that uses the miser
algorithm:
n |
Total number of points used for approximating integrals. |
integral |
Vector of actual integral approximations in each grid cell. |
mean.lambda |
Vector of the approximate final mean of lambda in each grid cell. |
sd.lambda |
Vector of the approximate standard deviation of lambda in each grid cell. |
app.pts |
A data frame of the x,y, and t coordinates of a sample of 10,000 of the sampled points for integral approximation, along with the value of lambda (l). |
Robert Clements
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | #===> load simulated data <===#
data(simdata)
X <- stpp(simdata$x, simdata$y, simdata$t)
#===> define two conditional intensity functions <===#
ci1 <- function(X, theta){theta*exp(-2*X$x - 2*X$y - 2*X$t)} #correct model
ci2 <- function(X, theta = NULL){rep(250, length(X$x))} #homogeneous Poisson model
## Not run:
deviance <- tessdev(X, ci1, ci2, theta1 = 3000)
#===> plot results <===#
plot(deviance)
## End(Not run)
|
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