Nothing
## ----include = FALSE--------------------------------------------------------------------------------------------------------------------------------
library(knitr)
opts_chunk$set(
comment = "",
fig.width = 12,
message = FALSE,
warning = FALSE,
tidy.opts = list(
keep.blank.line = TRUE,
width.cutoff = 150
),
options(width = 150),
eval = TRUE
)
## ---------------------------------------------------------------------------------------------------------------------------------------------------
library("survminer")
## ---------------------------------------------------------------------------------------------------------------------------------------------------
library("survival")
fit<- survfit(Surv(time, status) ~ sex, data = lung)
# Drawing survival curves
ggsurvplot(fit, data = lung)
## ---------------------------------------------------------------------------------------------------------------------------------------------------
ggsurvplot(fit, data = lung,
title = "Survival curves", subtitle = "Based on Kaplan-Meier estimates",
caption = "created with survminer",
font.title = c(16, "bold", "darkblue"),
font.subtitle = c(15, "bold.italic", "purple"),
font.caption = c(14, "plain", "orange"),
font.x = c(14, "bold.italic", "red"),
font.y = c(14, "bold.italic", "darkred"),
font.tickslab = c(12, "plain", "darkgreen"))
## ---------------------------------------------------------------------------------------------------------------------------------------------------
ggsurvplot(fit, data = lung, risk.table = TRUE)
## ---------------------------------------------------------------------------------------------------------------------------------------------------
ggsurvplot(fit, data = lung,
title = "Survival curves", subtitle = "Based on Kaplan-Meier estimates",
caption = "created with survminer",
font.title = c(16, "bold", "darkblue"),
font.subtitle = c(15, "bold.italic", "purple"),
font.caption = c(14, "plain", "orange"),
font.x = c(14, "bold.italic", "red"),
font.y = c(14, "bold.italic", "darkred"),
font.tickslab = c(12, "plain", "darkgreen"),
########## risk table #########,
risk.table = TRUE,
risk.table.title = "Note the risk set sizes",
risk.table.subtitle = "and remember about censoring.",
risk.table.caption = "source code: website.com",
risk.table.height = 0.45)
## ---- fig.height = 7.5, fig.width = 6---------------------------------------------------------------------------------------------------------------
ggsurvplot(fit, data = lung, risk.table = TRUE, ncensor.plot = TRUE)
## ---- fig.height = 7.5, fig.width = 6---------------------------------------------------------------------------------------------------------------
ggsurvplot(fit, data = lung,
title = "Survival curves", subtitle = "Based on Kaplan-Meier estimates",
caption = "created with survminer",
font.title = c(16, "bold", "darkblue"),
font.subtitle = c(15, "bold.italic", "purple"),
font.caption = c(14, "plain", "orange"),
font.x = c(14, "bold.italic", "red"),
font.y = c(14, "bold.italic", "darkred"),
font.tickslab = c(12, "plain", "darkgreen"),
########## risk table #########,
risk.table = TRUE,
risk.table.title = "Note the risk set sizes",
risk.table.subtitle = "and remember about censoring.",
risk.table.caption = "source code: website.com",
risk.table.height = 0.35,
ncensor.plot = TRUE,
ncensor.plot.title = "Number of censorings",
ncensor.plot.subtitle = "over the time.",
ncensor.plot.caption = "data available at data.com",
ncensor.plot.height = 0.35)
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