Files in taxize
Taxonomic Information from Around the Web
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/gnr_resolve.R
R/tax_agg.R
R/taxon_state.R
R/bold_downstream.R
R/itis_kingdomnames.R
R/gnr_datasources.R
R/get_uid.R
R/ion.R
R/get_utils.R
R/eubon_hierarchy.R
R/gbif_parse.R
R/itis_taxrank.R
R/tp_synonyms.R
R/http.R
R/ncbi_getbyid.R
R/pow_search.R
R/tax_name.R
R/eol_hierarchy.R
R/downstream.R
R/get_eolid.R
R/onload.R
R/eol_search.R
R/gisd_isinvasive.R
R/resolve.R
R/lowest_common.R
R/ncbi_search.R
R/downstream-utils.R
R/gni_details.R
R/plantminer.R
R/rename.R
R/taxize-params.R
R/iucn_getname.R
R/ncbi_getbyname.R
R/tp_classification.R
R/eol_pages.R
R/itis_hierarchy.R
R/get_nbnid.R
R/names_list.r
R/itis_name.R
R/sci2comm.R
R/progressor.R
R/tnrs_sources.r
R/get_ids.R
R/gni_parse.R
R/itis_native.R
R/get_natservid.R
R/get_tolid.R
R/col.R
R/eubon_capabilities.R
R/apg_lookup.R
R/gni_helpers.R
R/tax_rank.R
R/gn_parse.R
R/tp_summary.R
R/itis_lsid.R
R/eol_utiils.R
R/ubio_classification_search.R
R/tp_dist.R
R/eubon.R
R/tnrs.R
R/ncbi_children.R
R/phylomatic_format.R
R/taxize-package.R
R/eol_invasive.R
R/messages.R
R/ncbi_downstream.R
R/ubio_synonyms.R
R/tpl_get.r
R/tol_resolve.R
R/comm2sci.R
R/fungorum.R
R/get_tpsid.R
R/tol_id2name.R
R/taxize_options.R
R/get_pow.R
R/itis_getrecord.R
R/apg.R
R/taxize_cite.R
R/itis_acceptname.R
R/get_wiki.R
R/synonyms.R
R/limited_print.R
R/itis_downstream.R
R/gbif_name_usage.R
R/id2name.R
R/get_wormsid.R
R/nbn_synonyms.R
R/nbn_classification.R
R/ncbi_get_taxon_summary.R
R/eubon_children.R
R/gbif_helpers.R
R/get_gbifid.R
R/vascan_search.r
R/iucn_summary.R
R/iucn_id.R
R/gni_search.R
R/class2tree.R
R/tp_refs.R
R/taxize_capwords.r
R/tp_search.R
R/ipni_search.R
R/classification.R
R/gbif_downstream.R
R/get_ubioid.R
R/worms_downstream.R
R/ubio_search.R
R/phylomatic_tree.R
R/get_tsn.R
R/itis_terms.R
R/getkey.R
R/tpl_families.r
R/zzz.R
R/ping.R
R/get-id-details.R
R/genbank2uid.R
R/globals.R
R/ubio_id.R
R/children.R
R/bold_search.R
R/iplant_resolve.R
R/upstream.R
R/tp_accnames.R
R/scrapenames.r
R/tpl_search.r
R/eol_dataobjects.R
R/get_boldid.R
R/aaa.R
R/key_helpers.R
R/taxize_ldfast.R
R/ubio_classification.R
R/nbn_search.R
R/itis_refs.R
R/status_codes.R
R/rankagg.R
R/taxize-authentication.R
R/get_iucn.R
inst/CITATION
inst/examples/species.txt
inst/ignore/apg_script.R
inst/ignore/aou_notes.R
inst/ignore/taxonid.R
inst/ignore/try_with_timeout.R
inst/ignore/rank_ref_script.R
inst/ignore/taxonclass.R
inst/ignore/taxonclass2.R
inst/ignore/rbladj.r
inst/ignore/nature_serve.R
inst/ignore/phytools_fxns_touse.r
inst/ignore/phylomatic_tree2.R
inst/ignore/tests/test-ubio_namebank.R
inst/ignore/tests/test-ubio_search.R
inst/ignore/tests/test-ubio_synonyms.R
inst/ignore/tests/test-ubio_id.R
inst/ignore/tests/test-ubio_classification.R
tests/test-all.R
tests/testthat/test-taxon_state.R
tests/testthat/test-tp_dist.R
tests/testthat/test-key_helpers.R
tests/testthat/test-bold_children.R
tests/testthat/test-itis_native.R
tests/testthat/test-get_tpsid.R
tests/testthat/test-names_list.R
tests/testthat/test-itis_taxrank.R
tests/testthat/test-ncbi_children.R
tests/testthat/test-classification-gbif.R
tests/testthat/test-ipni_search.R
tests/testthat/test-iucn_getname.R
tests/testthat/test-get_tsn.R
tests/testthat/test-itis_getrecord.R
tests/testthat/test-get_uid.R
tests/testthat/test-eubon.R
tests/testthat/test-worms_downstream.R
tests/testthat/helper-taxize.R
tests/testthat/test-utils.R
tests/testthat/test-gbif_parse.R
tests/testthat/test-iucn_summary.R
tests/testthat/test-ncbi_rate_limit_pause.R
tests/testthat/test-genbank2uid.R
tests/testthat/test-itis_refs.R
tests/testthat/test-tp_accnames.R
tests/testthat/test-ncbi_downstream.R
tests/testthat/test-gnr_resolve.R
tests/testthat/test-class2tree.R
tests/testthat/test-tp_synonyms.R
tests/testthat/test-upstream.R
tests/testthat/test-get_eolid.R
tests/testthat/test-bold_downstream.R
tests/testthat/test-id2name.R
tests/testthat/test-taxize_options.R
tests/testthat/test-progressor.R
tests/testthat/test-gni_search.R
tests/testthat/test-tol_resolve.R
tests/testthat/test-get_natservid.R
tests/testthat/test-itis_terms.R
tests/testthat/test-ion.R
tests/testthat/test-lowest_common.R
tests/testthat/test-itis_downstream.R
tests/testthat/test-get_ids.R
tests/testthat/test-vascan_search.r
tests/testthat/test-gbif_downstream.R
tests/testthat/test-pow_search.R
tests/testthat/test-itis_hierarchy.R
tests/testthat/test-tp_search.R
tests/testthat/test-downstream.R
tests/testthat/test-ncbi_get_taxon_summary.R
tests/testthat/test-sci2comm.R
tests/testthat/test-tax_name.R
tests/testthat/test-gnr_datasources.R
tests/testthat/test-apgscraping.R
tests/testthat/Rplots.pdf
tests/testthat/test-itis_kingdomnames.R
tests/testthat/test-fungorum.R
tests/testthat/test-ping.R
tests/testthat/test-bold_search.R
tests/testthat/test-itis_lsid.R
tests/testthat/test-itis_ping.R
tests/testthat/test-eol_dataobjects.R
tests/testthat/test-classification-pow.R
tests/testthat/test-get_boldid.R
tests/testthat/test-comm2sci.R
tests/testthat/test-get_tolid.R
tests/testthat/test-tp_refs.R
tests/testthat/test-get_pow.R
tests/testthat/test-eol_search.R
tests/testthat/test-get_wormsid.R
tests/testthat/test-rankagg.R
tests/testthat/test-dataset_rank_ref.R
tests/testthat/test-gn_parse.R
tests/testthat/test-tp_summary.R
tests/testthat/test-plantminer.R
tests/testthat/test-itis_acceptname.R
tests/testthat/test-tax_agg.R
tests/testthat/test-get_gbifid.R
tests/testthat/test-gni_details.R
tests/testthat/test-gni_parse.R
tests/testthat/test-synonyms.R
tests/testthat/test-iucn_id.R
tests/testthat/test-tax_rank.R
tests/testthat/test-eol_ping.R
tests/testthat/test-classification.R
tests/testthat/test-children.R
tests/testthat/test-eol_pages.R
tests/fixtures/gni_search.yml
tests/fixtures/itis_lsid.yml
tests/fixtures/gbif_parse.yml
tests/fixtures/comm2sci_warn_on_db_mismatch.yml
tests/fixtures/itis_downstream.yml
tests/fixtures/fg_name_by_key.yml
tests/fixtures/get_wormsid_marine_only.yml
tests/fixtures/tax_name_ncbi.yml
tests/fixtures/synonyms_warn_on_db_mismatch.yml
tests/fixtures/itis_hierarchy.yml
tests/fixtures/tax_name_throws_warning.yml
tests/fixtures/classification_no_results.yml
tests/fixtures/ipni_search.yml
tests/fixtures/tax_name_rows_Arg.yml
tests/fixtures/ncbi_downstream_ambiguous_true.yml
tests/fixtures/get_gbifid_phylum_param.yml
tests/fixtures/gnr_datasources.yml
tests/fixtures/ncbi_downstream.yml
tests/fixtures/comm2sci.yml
tests/fixtures/sci2comm.yml
tests/fixtures/get_uid_ask_arg.yml
tests/fixtures/get_uid_name_modifiers.yml
tests/fixtures/tp_dist.yml
tests/fixtures/children_ambiguous_ncbi.yml
tests/fixtures/pow_lookup.yml
tests/fixtures/itis_refs.yml
tests/fixtures/itis_acceptname.yml
tests/fixtures/synonyms_name_found_but_no_synonyms_redlist.yml
tests/fixtures/ncbi_ping.yml
tests/fixtures/tax_name_na.yml
tests/fixtures/classification_pow_passing_id.yml
tests/fixtures/tnrs_order_row_names.yml
tests/fixtures/classification_passing_id.yml
tests/fixtures/pow_lookup_include_param.yml
tests/fixtures/get_tpsid_warnings_dots.yml
tests/fixtures/bold_search.yml
tests/fixtures/synonyms_name_not_found.yml
tests/fixtures/synonyms_itis.yml
tests/fixtures/pow_search.yml
tests/fixtures/taxon_state_get_gbifid.yml
tests/fixtures/tp_accnames.yml
tests/fixtures/classification_rank_is_lowercase.yml
tests/fixtures/itis_native.yml
tests/fixtures/upstream.yml
tests/fixtures/itis_acceptname_non_accepted_tsn.yml
tests/fixtures/tp_summary.yml
tests/fixtures/itis_ping.yml
tests/fixtures/gn_parse.yml
tests/fixtures/iucn_id_fail.yml
tests/fixtures/classification.yml
tests/fixtures/ncbi_get_taxon_summary_many_ids_short.yml
tests/fixtures/get_wormsid_multiple_exact_matches_found.yml
tests/fixtures/classification_gbif_ranks_correct_order.yml
tests/fixtures/get_boldid.yml
tests/fixtures/trpicos_ping.yml
tests/fixtures/get_colid.yml
tests/fixtures/classification_fetches_merged_taxon.yml
tests/fixtures/class2tree_internal_fxns.yml
tests/fixtures/get_tpsid_ask_arg.yml
tests/fixtures/genbank2uid_gi_numbers.yml
tests/fixtures/worms_downstream_marine_only_para.yml
tests/fixtures/tol_resolve_context_name.yml
tests/fixtures/gbif_downstream.yml
tests/fixtures/bold_downstream.yml
tests/fixtures/itis_ping_http_code_503.yml
tests/fixtures/class2tree_classification_call.yml
tests/fixtures/get_natservid.yml
tests/fixtures/fg_author_search.yml
tests/fixtures/synonyms_worms.yml
tests/fixtures/get_gbifid.yml
tests/fixtures/ion_fails_well.yml
tests/fixtures/get_eolid_ask_param.yml
tests/fixtures/downstream_worms_marine_only_para.yml
tests/fixtures/downstream_multiple_data_sources.yml
tests/fixtures/get_tolid_ask_arg.yml
tests/fixtures/get_tsn_ask_verbose_args.yml
tests/fixtures/classification_variety_of_names.yml
tests/fixtures/children_warn_on_db_mismatch.yml
tests/fixtures/ncbi_downstream_intermediate.yml
tests/fixtures/plantminer_not_found.yml
tests/fixtures/itis_ping_http_code_200.yml
tests/fixtures/get_uid.yml
tests/fixtures/children_no_results_structure_x.yml
tests/fixtures/tp_refs.yml
tests/fixtures/gni_parse_not_parsed.yml
tests/fixtures/get_gbifid_class_doesnt_matter.yml
tests/fixtures/get_tolid.yml
tests/fixtures/ipni_search_no_results.yml
tests/fixtures/itis_getrecord.yml
tests/fixtures/bold_ping.yml
tests/fixtures/tax_name_no_data.yml
tests/fixtures/classification_pow_no_results.yml
tests/fixtures/classification_gbif.yml
tests/fixtures/tnrs.yml
tests/fixtures/vascan_search.yml
tests/fixtures/gbif_downstream_intermediate.yml
tests/fixtures/class2tree_classification_dup_call.yml
tests/fixtures/classification_pow.yml
tests/fixtures/tax_rank.yml
tests/fixtures/synonyms_name_found_but_no_synonyms.yml
tests/fixtures/eol_pages2.yml
tests/fixtures/worms_downstream_previously_unaccounted_for_ranks.yml
tests/fixtures/tol_resolve_do_approximate_matching_false.yml
tests/fixtures/classification_gbif_ranks_below_species_var.yml
tests/fixtures/taxon_state_get_uid.yml
tests/fixtures/iucn_summary_other_egs.yml
tests/fixtures/children_bold.yml
tests/fixtures/children_with_id.yml
tests/fixtures/classification_pow_get_fxn.yml
tests/fixtures/plantminer.yml
tests/fixtures/gbif_downstream_pagination.yml
tests/fixtures/iucn_getname.yml
tests/fixtures/get_gbifid_state.yml
tests/fixtures/vascan_ping.yml
tests/fixtures/nbn_ping.yml
tests/fixtures/classification_warn_on_db_mismatch.yml
tests/fixtures/ncbi_children.yml
tests/fixtures/iucn_id.yml
tests/fixtures/worms_downstream_start_param.yml
tests/fixtures/tp_search_warnings_dots.yml
tests/fixtures/tax_name_arg_arg.yml
tests/fixtures/ncbi_get_taxon_summary_many_ids_long.yml
tests/fixtures/get_tpsid_warnings_subspecific.yml
tests/fixtures/tp_search.yml
tests/fixtures/classification_gbif_ranks_below_species_subsp.yml
tests/fixtures/eubon_search.yml
tests/fixtures/get_wormsid_fuzzy.yml
tests/fixtures/worms_downstream.yml
tests/fixtures/eol_dataobjects.yml
tests/fixtures/tp_synonyms.yml
tests/fixtures/ipni_search_output_formats.yml
tests/fixtures/get_pow_ask_arg.yml
tests/fixtures/tol_resolve.yml
tests/fixtures/get_tsn.yml
tests/fixtures/id2name_warn_on_db_mismatch.yml
tests/fixtures/children_itis_types.yml
tests/fixtures/classification_gbif_get_fxn.yml
tests/fixtures/children_no_results.yml
tests/fixtures/sci2comm_warn_on_db_mismatch.yml
tests/fixtures/classification_get_fxn.yml
tests/fixtures/classification_rows_param.yml
tests/fixtures/downstream_bold.yml
tests/fixtures/itis_terms.yml
tests/fixtures/downstream_rows_param.yml
tests/fixtures/bold_children.yml
tests/fixtures/get_boldid_ask_false.yml
tests/fixtures/classification_pow_cbind_rbind.yml
tests/fixtures/children_no_results_structure_ncbi_y.yml
tests/fixtures/genbank2uid.yml
tests/fixtures/fg_name_search.yml
tests/fixtures/get_uid_filtering_division.yml
tests/fixtures/get_gbifid_ask_arg.yml
tests/fixtures/worms_downstream_intermediate_param.yml
tests/fixtures/gni_details.yml
tests/fixtures/downstream.yml
tests/fixtures/get_tpsid.yml
tests/fixtures/ncbi_children_ambiguous.yml
tests/fixtures/iucn_summary.yml
tests/fixtures/itis_kingdomnames_with_tsns.yml
tests/fixtures/ncbi_downstream_handles_self_ids.yml
tests/fixtures/get_gbifid_method_param.yml
tests/fixtures/get_wormsid_query_modifiers.yml
tests/fixtures/children_with_name.yml
tests/fixtures/bold_downstream_intermediate.yml
tests/fixtures/tax_name_itis.yml
tests/fixtures/ncbi_downstream_ambiguous_false.yml
tests/fixtures/tnrs_sources.yml
tests/fixtures/get_pow.yml
tests/fixtures/apgOrders.yml
tests/fixtures/get_boldid_no_parent_name.yml
tests/fixtures/classification_pow_more_name_egs.yml
tests/fixtures/tax_rank_get_star_input.yml
tests/fixtures/ion.yml
tests/fixtures/get_wormsid_ask_arg.yml
tests/fixtures/itis_kingdomnames.yml
tests/fixtures/ncbi_children_id_class_check.yml
tests/fixtures/get_uid_rank_modifiers.yml
tests/fixtures/ncbi_get_taxon_summary.yml
tests/fixtures/get_wormsid_fail_with_rows_unknown.yml
tests/fixtures/downstream_warn_on_db_mismatch.yml
tests/fixtures/children_worms_marine_only.yml
tests/fixtures/get_natservid_ask_arg.yml
tests/fixtures/synonyms_name_not_found_redlist.yml
tests/fixtures/itis_taxrank.yml
tests/fixtures/gni_parse.yml
tests/fixtures/fg_name_full_by_lsid.yml
tests/fixtures/downstream_id_input.yml
tests/fixtures/get_colid_ask_arg.yml
tests/fixtures/get_pow_accepted_no_results.yml
tests/fixtures/genbank2uid_fails.yml
tests/fixtures/get_eolid.yml
tests/fixtures/get_uid_filtering_rank.yml
tests/fixtures/eol_pages.yml
tests/fixtures/get_wormsid.yml
tests/fixtures/children_no_results_structure_ncbi_x.yml
tests/fixtures/itis_kingdomnames_fail_well.yml
tests/fixtures/fg_epithet_search.yml
tests/fixtures/bold_children_no_results.yml
tests/fixtures/eol_dataobjects_taxonomy_param.yml
tests/fixtures/tp_search_warnings_subspecific.yml
tests/fixtures/children_rows_param.yml
tests/fixtures/tol_resolve_do_approximate_matching.yml
tests/fixtures/gbif_ping.yml
tests/fixtures/apgFamilies.yml
tests/fixtures/classification_cbind_rbind.yml
tests/fixtures/eol_search.yml
tests/fixtures/children_no_results_structure_y.yml
data/plantNames.RData
data/theplantlist.RData
data/rank_ref_zoo.RData
data/apg_families.RData
data/plantGenusNames.RData
data/species_plantarum_binomials.rda
data/worrms_ranks.RData
data/apg_orders.RData
data/rank_ref.RData
tools/screencast.png
man/nbn_synonyms.Rd
man/getkey.Rd
man/gnr_resolve.Rd
man/iucn_summary_id-defunct.Rd
man/gni_details.Rd
man/pow_search.Rd
man/eubon_capabilities.Rd
man/tp_summary.Rd
man/ncbi_get_taxon_summary.Rd
man/get_wormsid.Rd
man/gn_parse.Rd
man/gni_search.Rd
man/eol_hierarchy-defunct.Rd
man/tp_classification-defunct.Rd
man/tol_resolve.Rd
man/apg_orders.Rd
man/taxize_options.Rd
man/worms_downstream.Rd
man/get_tsn.Rd
man/key_helpers.Rd
man/ncbi_search-defunct.Rd
man/iucn_status.Rd
man/ion.Rd
man/tp_refs.Rd
man/taxize-params.Rd
man/gbif_parse.Rd
man/apg.Rd
man/get_pow.Rd
man/itis_hierarchy.Rd
man/status_codes.Rd
man/tp_synonyms.Rd
man/nbn_classification.Rd
man/fungorum.Rd
man/taxon-state.Rd
man/itis_taxrank.Rd
man/names_list.Rd
man/worrms_ranks.Rd
man/tp_namedistributions-deprecated.Rd
man/taxize-authentication.Rd
man/pow_lookup.Rd
man/tax_rank.Rd
man/scrapenames.Rd
man/progressor.Rd
man/iucn_getname.Rd
man/get_ids.Rd
man/bold_downstream.Rd
man/bold_children.Rd
man/tnrs-defunct.Rd
man/classification.Rd
man/itis_native.Rd
man/resolve.Rd
man/ubio_classification_search-defunct.Rd
man/tp_namereferences-deprecated.Rd
man/tax_name.Rd
man/gnr_datasources.Rd
man/get_natservid.Rd
man/gisd_invasive-defunct.Rd
man/eol_pages.Rd
man/vascan_search.Rd
man/theplantlist.Rd
man/taxize-package.Rd
man/ping.Rd
man/iucn_id.Rd
man/get_eolid.Rd
man/downstream.Rd
man/get_gbifid.Rd
man/eol_invasive-defunct.Rd
man/get_id_details.Rd
man/tpl_get.Rd
man/apg_lookup.Rd
man/sci2comm.Rd
man/taxon_state.Rd
man/get_wiki.Rd
man/id2name.Rd
man/tpl_families.Rd
man/eol_dataobjects.Rd
man/itis_kingdomnames.Rd
man/eubon_children.Rd
man/limited_print.Rd
man/rank_ref.Rd
man/use_eol-defunct.Rd
man/class2tree.Rd
man/gbif_downstream.Rd
man/taxize_capwords.Rd
man/species_plantarum_binomials.Rd
man/phylomatic_format-defunct.Rd
man/itis_lsid.Rd
man/ncbi_getbyname-defunct.Rd
man/genbank2uid.Rd
man/get_genes-defunct.Rd
man/plantminer.Rd
man/tpl_search-defunct.Rd
man/itis_acceptname.Rd
man/ipni_search.Rd
man/pow_synonyms.Rd
man/tax_agg.Rd
man/bold_search.Rd
man/eol_search.Rd
man/ncbi_children.Rd
man/rank_ref_zoo.Rd
man/apg_families.Rd
man/ubio_ping-defunct.Rd
man/taxize-defunct.Rd
man/ncbi_getbyid-defunct.Rd
man/itis_refs.Rd
man/tp_acceptednames-deprecated.Rd
man/col-defunct.Rd
man/ubio_search-defunct.Rd
man/iucn_summary.Rd
man/gbif_name_usage.Rd
man/ncbi_downstream.Rd
man/gni_parse.Rd
man/comm2sci.Rd
man/synonyms.Rd
man/ubio_id-defunct.Rd
man/itis_getrecord.Rd
man/eubon_search.Rd
man/upstream.Rd
man/get_seqs-defunct.Rd
man/taxize_cite.Rd
man/get_boldid.Rd
man/tp_search.Rd
man/ubio_classification-defunct.Rd
man/lowest_common.Rd
man/get_uid.Rd
man/tnrs_sources-defunct.Rd
man/iplant_resolve.Rd
man/plantNames.Rd
man/tp_accnames.Rd
man/eubon_hierarchy.Rd
man/get_ubioid-defunct.Rd
man/ubio_synonyms-defunct.Rd
man/phylomatic_tree-defunct.Rd
man/itis_downstream.Rd
man/children.Rd
man/get_tpsid.Rd
man/rankagg.Rd
man/get_genes_avail-defunct.Rd
man/eubon-defunct.Rd
man/itis_name-deprecated.Rd
man/get_tolid.Rd
man/itis_terms.Rd
man/tp_dist.Rd
man/nbn_search.Rd
man/get_nbnid.Rd
man/get_iucn.Rd
man/taxize_ldfast.Rd
man/plantGenusNames.Rd
man/figures/screencast.png
