tcplggplot2: tcplggplot2

In tcpl: ToxCast Data Analysis Pipeline

tcplggplot2

Description

tcplggplot2

Usage

tcplggplot2(
  dat,
  type = "mc",
  compare = "m4id",
  verbose = TRUE,
  flags = FALSE,
  yrange = c(NA, NA),
  group.fld = NULL,
  group.threshold = 9,
  hide_losing_models = FALSE
)

Arguments

dat	data table with all required conc/resp data; each row will extend comparison
type	string type of data that should be plotted 'sc' plotting - max medians plotted with hitcall 'mc' plotting - all fit models and winning model with hitcall
compare	Character vector, the field(s) samples were joined on for comparison
verbose	boolean should plotting include table of values next to the plot
flags	boolean should plotting include level 6 flags in plot caption
yrange	Integer of length 2, for overriding the y-axis range, c(<min>,<max>). By default, c(NA,NA).
group.fld	Character, column name to group curves by when number of comparison curves exceeds group.threshold. By default 'modl' for MC and 'hitc' for SC.
group.threshold	Integer of length 1, minimum number of samples in a given plot where comparison plots, instead of coloring models by sample, should delineate curve color by a given group.fld. By default 9.
hide_losing_models	Boolean, by default FALSE. For individual mc plots only, should the losing models be hidden?

Value

A ggplot object or grob with accompanied table depending on verbose option

tcpl documentation built on June 8, 2025, 11:41 a.m.