R/ppevm.R

Defines functions print.ppevm plot.ppevm ppevm

ppevm <-
function(object , nsim = 1000, alpha = .050){
    object <- texmexStandardForm(object)
    # Want parameters as a matrix with one row for passing
    # into family$rng and so on
    a <- t(object$coefficients)
    u <- object$threshold
    dat <- object$data$y

    pfun <- object$family$prob
    rfun <- object$family$rng

    ModPoints <- ppoints(dat)
    # If doing the envelope, simulate, sort and get the quantiles
    if (nsim > 0){
        n <- length(dat)
        sim <- matrix(rfun(nsim * n, a, object), ncol = nsim)
        sim <- apply(sim, 2, sort)
        sim <- apply(sim, 2, pfun, param=a, model = object)
        sim <- apply(sim, 1, quantile, prob = c(alpha/2, 1 - alpha/2))
    }
    else { sim <- NULL }

    res <- list(ModPoints=ModPoints, sim=sim, pfun=pfun, rfun=rfun, dat=dat, a=a, model=object)
    oldClass(res) <- 'ppevm'
    res
}

#' @export
plot.ppevm <- function(x, xlab, ylab,  main,
                       pch=1, col = 2, cex = .75, linecol = 4,
                       intcol = 0, polycol=15, ...){

    if (missing(xlab) || is.null(xlab) ) { xlab <- "Model" }
    if (missing(ylab) || is.null(ylab) ) { ylab <- "Empirical" }
    if (missing(main) || is.null(main) ) { main <- "Probability Plot" }
  
    oldpar <- par(pty = "s"); on.exit(oldpar)

    plot(x$ModPoints, x$pfun(sort(x$dat), x$a, x$model),
         xlab = xlab, ylab = ylab, main = main, type = "n")

	# If doing the envelope, plot it before putting the data on 
    if (!is.null(x$sim)){
        if (polycol != 0)
            polygon(c(x$ModPoints, rev(x$ModPoints)), c(x$sim[1, ], rev(x$sim[2, ])),
                    col=polycol, border=FALSE)
        lines(x$ModPoints, x$sim[1, ], col = intcol)
        lines(x$ModPoints, x$sim[2, ], col = intcol)
    }

    abline(0, 1, col = linecol)
    points(x$ModPoints,
           x$pfun(sort(x$dat), x$a, x$model),
           pch = pch , col = col, cex = cex)
    box()
    invisible()
}

#' @export
print.ppevm <- function(x, xlab, ylab,  main,
                        pch=1, col = 2, cex = .75, linecol = 4,
                        intcol = 0, polycol=15, ...){
    plot.ppevm(x, xlab, ylab,  main,
               pch=pch, col = col, cex = cex, linecol = linecol,
                intcol = intcol, polycol=polycol, ...)
    invisible(x)
}

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texmex documentation built on May 2, 2019, 5:41 a.m.