tgp.design: Sequential Treed D-Optimal Design for Treed Gaussian Process...

In tgp: Bayesian Treed Gaussian Process Models

Sequential Treed D-Optimal Design for Treed Gaussian Process Models

Description

Based on the maximum a' posteriori (MAP) treed partition extracted from a "tgp"-class object, calculate independent sequential treed D-Optimal designs in each of the regions.

Usage

tgp.design(howmany, Xcand, out, iter = 5000, verb = 0)

Arguments

howmany	Number of new points in the design. Must be less than the number of candidates contained in Xcand, i.e., howmany <= nrow(Xcand)
Xcand	data.frame, matrix or vector of candidates from which new design points are subsampled. Must have nrow(Xcand) == nrow(out$X)
out	"tgp"-class object output from one of the model functions which has tree support, e.g., btgpllm, btgp, btlm
iter	number of iterations of stochastic accent algorithm, default 5000
verb	positive integer indicating after how many rounds of stochastic approximation in dopt.gp to print each progress statement; default verb=0 results in no printing

Details

This function partitions Xcand and out$X based on the MAP tree (obtained on "tgp"-class out with partition) and calls dopt.gp in order to obtain a D-optimal design under independent stationary Gaussian processes models defined in each region. The aim is to obtain a design where new points from Xcand are spaced out relative to themselves, and relative to the existing locations (out$X) in the region. The number of new points from each region of the partition is proportional to the number of candidates Xcand in the region.

Value

Output is a list of data.frames containing XX design points for each region of the MAP tree in out

Note

Input Xcand containing NaN, NA, Inf are discarded with non-fatal warnings

D-Optimal computation in each region is preceded by a print statement indicated the number of new locations to be chosen and the number of candidates in the region. Other than that, there are no other indicators of progress. You will have to be patient. Creating treed sequential D-optimal designs is no speedy task. At least it faster than the non-treed version (see dopt.gp).

The example below is also part of vignette("tgp"). Please see vignette("tgp2") for a similar example based on optimization using the optim.step.tgp

Author(s)

Robert B. Gramacy, [e-mail], and Matt Taddy, [e-mail]

References

Gramacy, R. B. (2020) Surrogates: Gaussian Process Modeling, Design and Optimization for the Applied Sciences. Boca Raton, Florida: Chapman Hall/CRC. (See Chapter 9.) https://bobby.gramacy.com/surrogates/

Gramacy, R. B. (2007). tgp: An R Package for Bayesian Nonstationary, Semiparametric Nonlinear Regression and Design by Treed Gaussian Process Models. Journal of Statistical Software, 19(9). https://www.jstatsoft.org/v19/i09 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.18637/jss.v019.i09")}

Robert B. Gramacy, Matthew Taddy (2010). Categorical Inputs, Sensitivity Analysis, Optimization and Importance Tempering with tgp Version 2, an R Package for Treed Gaussian Process Models. Journal of Statistical Software, 33(6), 1–48. https://www.jstatsoft.org/v33/i06/ \Sexpr[results=rd]{tools:::Rd_expr_doi("10.18637/jss.v033.i06")}

Gramacy, R. B., Lee, H. K. H. (2006). Adaptive design and analysis of supercomputer experiments. Technometrics, 51(2), pp. 130-145. Also avaliable on ArXiv article 0805.4359 https://arxiv.org/abs/0805.4359

Gramacy, R. B., Lee, H. K. H., & Macready, W. (2004). Parameter space exploration with Gaussian process trees. ICML (pp. 353–360). Omnipress & ACM Digital Library.

https://bobby.gramacy.com/r_packages/tgp/

See Also

bgpllm, btlm, blm, bgp, btgpllm, plot.tgp, dopt.gp, lhs, partition, optim.step.tgp

Examples

#
# 2-d Exponential data
# (This example is based on random data.  
# It might be fun to run it a few times)
#

# get the data
exp2d.data <- exp2d.rand()
X <- exp2d.data$X; Z <- exp2d.data$Z
Xcand <- exp2d.data$XX

# fit treed GP LLM model to data w/o prediction
# basically just to get MAP tree (and plot it)
out <- btgpllm(X=X, Z=Z, pred.n=FALSE, corr="exp")
tgp.trees(out)

# find a treed sequential D-Optimal design 
# with 10 more points.  It is interesting to 
# contrast this design with one obtained via
# the dopt.gp function
XX <- tgp.design(10, Xcand, out)

# now fit the model again in order to assess
# the predictive surface at those new design points
dout <- btgpllm(X=X, Z=Z, XX=XX, corr="exp")
plot(dout)

tgp documentation built on Sept. 11, 2024, 8:22 p.m.