quick_enrich: quick_enrich

In tinyarray: Expression Data Analysis and Visualization

quick_enrich

Description

do diffiencial analysis according to exprission set and group information,for human only

Usage

quick_enrich(
  genes,
  kkgo_file = "kkgo_file.Rdata",
  destdir = getwd(),
  species = "human"
)

Arguments

genes	a gene symbol or entrizid vector
kkgo_file	Rdata filename for kegg and go result
destdir	destdir to save kkgofile
species	choose human or mouse, or rat, default: human

Value

enrichment results and dotplots

Author(s)

Xiaojie Sun

See Also

double_enrich

Examples

## Not run: 
if(requireNamespace("org.Hs.eg.db",quietly = TRUE)){
  head(genes)
  g = quick_enrich(genes,destdir = tempdir())
  names(g)
  g[[1]][1:4,1:4]
  g[[3]]
  g[[4]]
}else{
  warning("Package 'org.Hs.eg.db' needed for this function to work.
         Please install it by BiocManager::install('org.Hs.eg.db')",call. = FALSE)
  }

## End(Not run)

tinyarray documentation built on June 22, 2024, 9:58 a.m.