is.cophy: Test for the cophygenetic set object
In treeducken: Nested Phylogenetic Tree Simulator

Description Usage Arguments Details Value Functions See Also Examples

Tests if an object is of class 'cophy'

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is.cophy(cophy)

is.multiCophylo(multiCophy)

`cophy`	an object to test to see if it is of class 'cophy'
`multiCophy`	an object to test for multiCophy

Checks that an object is of class 'cophy'. For multicophy checks that the class is 'multiCophylo' and that each element is of class 'cophy'.

A logical vector

is.multiCophylo: Tests for 'multiCophylo' composed of 'cophy' objects

as.cophy

h_lambda <- 1.0
h_mu <- 0.3
c_lambda <- 0.0
s_lambda <- 1.0
s_mu <- 0.3
s_her <- 0.0
host_symb_sets <- sim_cophyBD(hbr = h_lambda,
                                  hdr = h_mu,
                                  sbr = s_lambda,
                                  cosp_rate = c_lambda,
                                  sdr = s_mu,
                                  host_exp_rate = s_her,
                                  time_to_sim = 2.0,
                                  numbsim = 1)
is.cophy(host_symb_sets[[1]])
is.multiCophylo(host_symb_sets)