sim_stBD_t: Simulates species tree using constant rate birth-death...

In treeducken: Nested Phylogenetic Tree Simulator

Description

Forward simulates a tree until a provided time is reached.

Usage

sim_stBD_t(sbr, sdr, numbsim, t)

sim_sptree_bdp_time(sbr, sdr, numbsim, t)

Arguments

sbr	species birth rate (i.e. speciation rate)
sdr	species death rate (i.e. extinction rate)
numbsim	number of species trees to simulate
t	time to simulate to

Value

List of objects of the tree class (as implemented in APE)

References

K. Hartmann, D. Wong, T. Stadler. Sampling trees from evolutionary models. Syst. Biol., 59(4): 465-476, 2010.

T. Stadler. Simulating trees on a fixed number of extant species. Syst. Biol., 60: 676-684, 2011.

Examples

mu <- 0.5 # death rate
lambda <- 2.0 # birth rate
numb_replicates <- 10
time <- 1

tree_list <- sim_stBD_t(sbr = lambda,
                sdr = mu,
                numbsim = numb_replicates,
                t = time)

treeducken documentation built on March 3, 2021, 1:11 a.m.