c.cophy: Combine cophylogenetic sets into a multiCophy object

In treeducken: Nested Phylogenetic Tree Simulator

Description

Combines cophylogenetic sets into a multiCophy object.

Usage

## S3 method for class 'cophy'
c(...)

## S3 method for class 'multiCophy'
c(...)

Arguments

...	Values of class 'cophy'

Value

An object of class 'multiCophy'

Functions

• c.multiCophy: Combines two multiCophy objects into one multiCophy object

Author(s)

Wade Dismukes and Emmanuel Paradis

See Also

'c' generic function

Examples

h_lambda <- 1.0
h_mu <- 0.3
c_lambda <- 0.0
s_lambda <- 1.0
s_mu <- 0.3
s_her <- 0.0
host_symb_sets <-  sim_cophylo_bdp(hbr = h_lambda,
                                  hdr = h_mu,
                                  sbr = s_lambda,
                                  cosp_rate = c_lambda,
                                  sdr = s_mu,
                                  host_exp_rate = s_her,
                                  time_to_sim = 1.0,
                                  numbsim = 2)
host_symb_sets2 <- sim_cophylo_bdp(hbr = h_lambda,
                                  hdr = h_mu,
                                  sbr = s_lambda,
                                  cosp_rate = c_lambda,
                                  sdr = s_mu,
                                  host_exp_rate = s_her,
                                  time_to_sim = 1.0,
                                  numbsim = 2)
multi_host_symb <- c(host_symb_sets[[1]], host_symb_sets2[[2]])
multi_host_symb_alt <- c(host_symb_sets, host_symb_sets2)

treeducken documentation built on March 3, 2021, 1:11 a.m.