API for treestats
Phylogenetic Tree Statistics
| Global functions | |
|---|---|
| ILnumber | Man page Source code |
| ILnumber_cpp | Source code |
| ILnumber_ltable_cpp | Source code |
| area_per_pair | Man page Source code |
| average_leaf_depth | Man page Source code |
| avgLadder_cpp | Source code |
| avg_ladder | Man page Source code |
| avg_vert_depth | Man page Source code |
| b1 | Man page Source code |
| b2 | Man page Source code |
| beta_statistic | Man page Source code |
| blum | Man page Source code |
| branching_times | Man page Source code |
| branching_times_cpp | Source code |
| branching_times_ltable_cpp | Source code |
| brute_mntd | Source code |
| calc_Ibased_cpp | Source code |
| calc_Ibased_ltable_cpp | Source code |
| calc_J_cpp | Source code |
| calc_all_stats | Man page Source code |
| calc_avg_vert_depth_cpp | Source code |
| calc_b1_cpp | Source code |
| calc_b1_ltable_cpp | Source code |
| calc_b2_cpp | Source code |
| calc_b2_ltable_cpp | Source code |
| calc_beta_cpp | Source code |
| calc_beta_ltable_cpp | Source code |
| calc_blum_cpp | Source code |
| calc_blum_ltable_cpp | Source code |
| calc_brts_stats | Man page Source code |
| calc_colless_corr_cpp | Source code |
| calc_colless_corr_ltable_cpp | Source code |
| calc_colless_cpp | Source code |
| calc_colless_ltable_cpp | Source code |
| calc_colless_quad_cpp | Source code |
| calc_colless_quad_ltable_cpp | Source code |
| calc_crown_age_cpp | Source code |
| calc_diameter_cpp | Source code |
| calc_diameter_ltable_cpp | Source code |
| calc_double_cherries_cpp | Source code |
| calc_double_cherries_ltable_cpp | Source code |
| calc_eWcolless_cpp | Source code |
| calc_eWcolless_ltable_cpp | Source code |
| calc_four_prong_cpp | Source code |
| calc_four_prong_ltable_cpp | Source code |
| calc_gamma_cpp | Source code |
| calc_gamma_cpp2 | Source code |
| calc_gamma_ltable_cpp | Source code |
| calc_j_one_cpp | Source code |
| calc_j_one_ltable_cpp | Source code |
| calc_max_betweenness_cpp | Source code |
| calc_max_betweenness_ltable_cpp | Source code |
| calc_max_closeness_cpp | Source code |
| calc_max_del_width_cpp | Source code |
| calc_max_del_width_ltable_cpp | Source code |
| calc_max_depth_cpp | Source code |
| calc_max_depth_ltable_cpp | Source code |
| calc_max_width_cpp | Source code |
| calc_max_width_ltable_cpp | Source code |
| calc_mean_branch_length_cpp | Source code |
| calc_mean_branch_length_ltable_cpp | Source code |
| calc_mntd_cpp | Source code |
| calc_mntd_ltable_cpp | Source code |
| calc_mpd_cpp | Source code |
| calc_mw_over_md_cpp | Source code |
| calc_mw_over_md_ltable_cpp | Source code |
| calc_nltt_cpp | Source code |
| calc_nltt_ltable_cpp | Source code |
| calc_phylodiv_cpp | Source code |
| calc_phylodiv_ltable_cpp | Source code |
| calc_phylogenetic_diversity | Source code |
| calc_psv_cpp | Source code |
| calc_rho_complete_cpp | Source code |
| calc_rho_cpp | Source code |
| calc_rho_ltable_cpp | Source code |
| calc_rogers_cpp | Source code |
| calc_rogers_ltable_cpp | Source code |
| calc_root_imbalance_cpp | Source code |
| calc_root_imbalance_ltable_cpp | Source code |
| calc_rquartet_cpp | Source code |
| calc_rquartet_ltable_cpp | Source code |
| calc_sackin_cpp | Source code |
| calc_sackin_ltable_cpp | Source code |
| calc_sym_nodes_cpp | Source code |
| calc_topology_stats | Man page Source code |
| calc_tot_coph_cpp | Source code |
| calc_tot_coph_ltable_cpp | Source code |
| calc_var_leaf_depth_cpp | Source code |
| calc_var_leaf_depth_ltable_cpp | Source code |
| calc_var_mpd_cpp | Source code |
| calc_wiener_cpp | Source code |
| check_binary | Source code |
| check_normalization_key | Source code |
| check_tree | Source code |
| cherries | Man page Source code |
| cherries_cpp | Source code |
| cherries_ltable_cpp | Source code |
| colless | Man page Source code |
| colless_corr | Man page Source code |
| colless_quad | Man page Source code |
| create_fully_balanced_tree | Man page Source code |
| create_fully_unbalanced_tree | Man page Source code |
| crown_age | Man page Source code |
| diameter | Man page Source code |
| double_cherries | Man page Source code |
| eigen_centrality | Man page Source code |
| entropy_j | Man page Source code |
| ew_colless | Man page Source code |
| four_prong | Man page Source code |
| gamma_statistic | Man page Source code |
| get_attractor | Source code |
| imbalance_steps | Man page Source code |
| imbalance_steps_cpp | Source code |
| integr | Source code |
| j_one | Man page Source code |
| l_to_newick | Source code |
| l_to_phylo | Man page Source code |
| laplacian_spectrum | Man page Source code |
| list_statistics | Man page Source code |
| ltable_to_newick | Man page Source code |
| make_any | Source code |
| make_terminal | Source code |
| make_unbalanced_tree | Man page Source code |
| make_unbalanced_tree_oldest | Source code |
| make_unbalanced_tree_random | Source code |
| make_unbalanced_tree_terminal | Source code |
| make_unbalanced_tree_terminal_oldest | Source code |
| make_unbalanced_tree_terminal_youngest | Source code |
| make_unbalanced_tree_youngest | Source code |
| max_betweenness | Man page Source code |
| max_closeness | Man page Source code |
| max_del_width | Man page Source code |
| max_depth | Man page Source code |
| max_ladder | Man page Source code |
| max_ladder_cpp | Source code |
| max_width | Man page Source code |
| mean_branch_length | Man page Source code |
| mean_branch_length_ext | Man page Source code |
| mean_branch_length_int | Man page Source code |
| mean_i | Man page Source code |
| mean_pair_dist | Man page Source code |
| minmax_adj | Man page Source code |
| minmax_laplace | Man page Source code |
| mntd | Man page Source code |
| mw_over_md | Man page Source code |
| nLTT | Man page Source code |
| nLTT_base | Man page Source code |
| number_of_lineages | Man page Source code |
| phylo_to_l | Man page Source code |
| phylogenetic_diversity | Man page Source code |
| pigot_rho | Man page Source code |
| pitchforks | Man page Source code |
| pitchforks_cpp | Source code |
| pitchforks_ltable_cpp | Source code |
| prep_adj_mat | Source code |
| prep_lapl_spec | Source code |
| psv | Man page Source code |
| rebase_ltable | Man page Source code |
| renumber_ltable | Source code |
| rogers | Man page Source code |
| root_imbalance | Man page Source code |
| rquartet | Man page Source code |
| sackin | Man page Source code |
| skew_ness | Source code |
| stairs | Man page Source code |
| stairs2 | Man page Source code |
| stairs2_cpp | Source code |
| stairs2_ltable_cpp | Source code |
| stairs_cpp | Source code |
| stairs_ltable_cpp | Source code |
| swap_deepest | Source code |
| sym_nodes | Man page Source code |
| tot_coph | Man page Source code |
| tot_internal_path | Man page Source code |
| tot_internal_path_cpp | Source code |
| tot_path_length | Man page Source code |
| tree_height | Man page Source code |
| treeness | Man page Source code |
| treestats | Man page |
| treestats-package | Man page |
| try_stat | Source code |
| var_branch_length | Man page Source code |
| var_branch_length_ext | Man page Source code |
| var_branch_length_int | Man page Source code |
| var_leaf_depth | Man page Source code |
| var_pair_dist | Man page Source code |
| wiener | Man page Source code |
