stairs: Stairs index
In treestats: Phylogenetic Tree Statistics
stairs R Documentation
Stairs index
Description
Calculates the staircase-ness measure, from the phyloTop
package. The staircase-ness reflects the number of subtrees that are
imbalanced, e.g. subtrees where the left child has more extant tips than the
right child, or vice versa.
Usage
stairs(input_obj)
Arguments
input_obj
phylo object or ltable
Value
number of stairs
References
Norström, Melissa M., et al. "Phylotempo: a set of r scripts for
assessing and visualizing temporal clustering in genealogies inferred from
serially sampled viral sequences." Evolutionary Bioinformatics 8 (2012):
EBO-S9738.
treestats documentation built on Sept. 14, 2024, 9:08 a.m.
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| stairs | R Documentation |
Stairs index
Description
Calculates the staircase-ness measure, from the phyloTop package. The staircase-ness reflects the number of subtrees that are imbalanced, e.g. subtrees where the left child has more extant tips than the right child, or vice versa.
Usage
stairs(input_obj)
Arguments
input_obj |
phylo object or ltable |
Value
number of stairs
References
Norström, Melissa M., et al. "Phylotempo: a set of r scripts for assessing and visualizing temporal clustering in genealogies inferred from serially sampled viral sequences." Evolutionary Bioinformatics 8 (2012): EBO-S9738.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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