API for umiAnalyzer
Tools for Analyzing Sequencing Data with Unique Molecular Identifiers
| Global functions | |
|---|---|
| AmpliconHeatmap | Man page Source code |
| AmpliconPlot | Man page Source code |
| BarcodeFamilyHistogram | Man page Source code |
| QCplot | Man page Source code |
| UMIexperiment | Man page |
| UMIexperiment-class | Man page |
| UMIsample | Man page |
| UMIsample-class | Man page |
| UmiCountsPlot | Man page Source code |
| addMetaData | Man page Source code |
| addUmiSample | Man page Source code |
| analyzeTimeSeries | Source code |
| betaNLL | Source code |
| beta_binom | Man page Source code |
| callVariants | Man page Source code |
| createUMIexperiment_Debarcer | Man page Source code |
| createUMIsample_Debarcer | Man page Source code |
| createUmiExperiment | Man page Source code |
| createUmiSample | Man page Source code |
| download_template | Man page Source code |
| filterConsensusTable | Source code |
| filterUmiObject | Man page Source code |
| filterVariants | Man page Source code |
| findConsensusReads | Man page Source code |
| generateVCF | Man page Source code |
| getFilteredData | Man page Source code |
| getMetaData | Man page Source code |
| importBedFile | Man page Source code |
| importDesign | Man page Source code |
| is_Numeric | Source code |
| mergeAssays | Man page Source code |
| mergeTechnicalReplicates | Source code |
| parseBamFiles | Man page Source code |
| readBamFile | Source code |
| runUmiVisualizer | Man page Source code |
| saveConsData | Man page Source code |
| select_theme | Source code |
| simsen | Man page |
| stacked_amplicon_plot | Source code |
| timeSeriesGrid | Man page Source code |
| viewNormPlot | Source code |
| vizMergedData | Source code |
| vizNormalization | Source code |
| vizStackedCounts | Source code |
