BarcodeFamilyHistogram: Consensus depth histograms

In umiAnalyzer: Tools for Analyzing Sequencing Data with Unique Molecular Identifiers

Description

Generate histograms for the frequency of barcode family depths.

Usage

BarcodeFamilyHistogram(
  object,
  xMin = 0,
  xMax = 100,
  samples = NULL,
  option = "viridis",
  direction = 1,
  theme = "classic"
)

Arguments

object	Requires a UMI sample or UMI experiment object
xMin	Minimum consensus family size to plot, default is 0.
xMax	Maximum consensus family size to plot. Default is 100.
samples	List of samples to be shown.
option	Color scheme to use
direction	If using viridis colors sets the orientation of color scale.
theme	ggplot theme to use. Defaults to classic.

Value

A ggplot object

Examples

library(umiAnalyzer)
main = system.file('extdata', package = 'umiAnalyzer')
simsen <- createUmiExperiment(main, importBam = TRUE)
barcode_dist <- BarcodeFamilyHistogram(simsen)

umiAnalyzer documentation built on Nov. 25, 2021, 9:07 a.m.