createUmiSample: createUmiSample
In umiAnalyzer: Tools for Analyzing Sequencing Data with Unique Molecular Identifiers
Description
Usage
Arguments
Value
Examples
Description
Method for creating a UMI sample from UMIErrorCorrect output.
Usage
1
createUmiSample(sampleName, sampleDir, importBam = FALSE)
Arguments
sampleName
UMI sample object name
sampleDir
Path to UMI sample folders. Must be a folder generated by UMIErrorCorrect
importBam
Logical. Should BAM files be imported at object initialization? Default is False.
Value
An object of class UMIsample
Examples
1
2
3
4
5
library(umiAnalyzer)
main = system.file('extdata', package = 'umiAnalyzer')
samples <- list.dirs(path = main, full.names = FALSE, recursive = FALSE)
s1 <- createUmiSample('s1',sampleDir = paste(main,"/",samples[1],sep=""))
umiAnalyzer documentation built on Nov. 25, 2021, 9:07 a.m.
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Description Usage Arguments Value Examples
Description
Method for creating a UMI sample from UMIErrorCorrect output.
Usage
1 | createUmiSample(sampleName, sampleDir, importBam = FALSE)
|
Arguments
sampleName |
UMI sample object name |
sampleDir |
Path to UMI sample folders. Must be a folder generated by UMIErrorCorrect |
importBam |
Logical. Should BAM files be imported at object initialization? Default is False. |
Value
An object of class UMIsample
Examples
1 2 3 4 5 | library(umiAnalyzer)
main = system.file('extdata', package = 'umiAnalyzer')
samples <- list.dirs(path = main, full.names = FALSE, recursive = FALSE)
s1 <- createUmiSample('s1',sampleDir = paste(main,"/",samples[1],sep=""))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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