createUmiExperiment: Method for creating a UMI experiment object
In umiAnalyzer: Tools for Analyzing Sequencing Data with Unique Molecular Identifiers
Description
Usage
Arguments
Value
Examples
Description
Method for creating a UMI experiment object
Usage
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createUmiExperiment(
mainDir,
experimentName = NULL,
sampleNames = NULL,
importBam = FALSE,
as.shiny = FALSE
)
Arguments
mainDir
Main experiment directory
experimentName
Name of the experiment
sampleNames
List of sample names. Can be either NULL or list. If NULL all subdirectories of mainDir will be searched.
importBam
Logical. Should bam files be imported on creation? Default is False.
as.shiny
Set to TRUE if run within a shiny::withProgress environment
Value
An object of class UMIexperiment
Examples
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library(umiAnalyzer)
main = system.file('extdata', package = 'umiAnalyzer')
samples <- list.dirs(path = main, full.names = FALSE, recursive = FALSE)
exp1 <- createUmiExperiment(experimentName = 'exp1',mainDir = main,sampleNames = samples)
umiAnalyzer documentation built on Nov. 25, 2021, 9:07 a.m.
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Description Usage Arguments Value Examples
Description
Method for creating a UMI experiment object
Usage
1 2 3 4 5 6 7 | createUmiExperiment(
mainDir,
experimentName = NULL,
sampleNames = NULL,
importBam = FALSE,
as.shiny = FALSE
)
|
Arguments
mainDir |
Main experiment directory |
experimentName |
Name of the experiment |
sampleNames |
List of sample names. Can be either NULL or list. If NULL all subdirectories of mainDir will be searched. |
importBam |
Logical. Should bam files be imported on creation? Default is False. |
as.shiny |
Set to TRUE if run within a shiny::withProgress environment |
Value
An object of class UMIexperiment
Examples
1 2 3 4 5 6 7 | library(umiAnalyzer)
main = system.file('extdata', package = 'umiAnalyzer')
samples <- list.dirs(path = main, full.names = FALSE, recursive = FALSE)
exp1 <- createUmiExperiment(experimentName = 'exp1',mainDir = main,sampleNames = samples)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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