importDesign: Import experimental design meta data such as replicates,...

In umiAnalyzer: Tools for Analyzing Sequencing Data with Unique Molecular Identifiers

Description

Import experimental design meta data such as replicates, treatments, categorical variables.

Usage

importDesign(object, file, delim = NULL)

Arguments

object	UMI.experiment to which to add metadata
file	File containing meta data
delim	Column separator. Default is NULL (automatically determine delimiter)

Value

A UMIexperiment object

Examples

library(umiAnalyzer)

main <- system.file("extdata", package = "umiAnalyzer")

simsen <- createUmiExperiment(main)

metaData <- system.file("extdata", "metadata.txt", package = "umiAnalyzer")

simsen <- importDesign(object = simsen,file = metaData)

# Retrieve meta data
design <- getMetaData(object = simsen, attributeName = "design")
design

umiAnalyzer documentation built on Nov. 25, 2021, 9:07 a.m.