generateVCF: Generate VCF file from UMI sample or UMI experiment object

In umiAnalyzer: Tools for Analyzing Sequencing Data with Unique Molecular Identifiers

Description

Generate VCF file from UMI sample or UMI experiment object

Usage

generateVCF(object, outDir = getwd(), outFile, printAll = FALSE)

Arguments

object	Requires a UMI sample or UMI experiment object
outDir	String. Output directory, defaults to working directory.
outFile	String. Name of the output file
printAll	Logical. Should all or only trusted variant be printed?

Value

A VCF file

Examples

## Not run: 
library(umiAnalyzer)

main <- system.file("extdata", package = "umiAnalyzer")

simsen <- createUmiExperiment(main)

simsen <- filterUmiObject(simsen)

generateVCF(simsen,'simsen.vcf', printAll = FALSE, save = FALSE)

## End(Not run)

umiAnalyzer documentation built on Nov. 25, 2021, 9:07 a.m.