bed_projection: Projection test for query interval overlap.

Description Usage Arguments Details Value See Also Examples

View source: R/bed_projection.r

Description

Projection test for query interval overlap.

Usage

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bed_projection(x, y, genome, by_chrom = FALSE)

Arguments

x

ivl_df

y

ivl_df

genome

genome_df

by_chrom

compute test per chromosome

Details

Interval statistics can be used in combination with dplyr::group_by() and dplyr::do() to calculate statistics for subsets of data. See vignette('interval-stats') for examples.

Value

ivl_df with the following columns:

See Also

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002529

Other interval statistics: bed_absdist(), bed_fisher(), bed_jaccard(), bed_reldist()

Examples

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genome <- read_genome(valr_example('hg19.chrom.sizes.gz'))

x <- bed_random(genome, seed = 1010486)
y <- bed_random(genome, seed = 9203911)

bed_projection(x, y, genome)

bed_projection(x, y, genome, by_chrom = TRUE)

valr documentation built on Dec. 11, 2021, 9:57 a.m.