bed_random: Generate randomly placed intervals on a genome.

In valr: Genome Interval Arithmetic

Generate randomly placed intervals on a genome.

Description

Generate randomly placed intervals on a genome.

Usage

bed_random(genome, length = 1000, n = 1e+06, seed = 0, sorted = TRUE)

Arguments

genome	genome_df
length	length of intervals
n	number of intervals to generate
seed	seed RNG for reproducible intervals
sorted	return sorted output

Details

Sorting can be suppressed with sorted = FALSE.

Value

ivl_df

See Also

https://bedtools.readthedocs.io/en/latest/content/tools/random.html

Other randomizing operations: bed_shuffle()

Examples

genome <- tibble::tribble(
  ~chrom,  ~size,
  "chr1",  10000000,
  "chr2",  50000000,
  "chr3",  60000000,
  "chrX",  5000000
)

bed_random(genome, seed = 10104)

# sorting can be suppressed
bed_random(genome, sorted = FALSE, seed = 10104)

# 500 random intervals of length 500
bed_random(genome, length = 500, n = 500, seed = 10104)

valr documentation built on Sept. 19, 2023, 1:07 a.m.