bed_sort | R Documentation |
Sort a set of intervals.
bed_sort(x, by_size = FALSE, by_chrom = FALSE, reverse = FALSE)
x |
ivl_df |
by_size |
sort by interval size |
by_chrom |
sort within chromosome |
reverse |
reverse sort order |
https://bedtools.readthedocs.io/en/latest/content/tools/sort.html
x <- tibble::tribble(
~chrom, ~start, ~end,
"chr8", 500, 1000,
"chr8", 1000, 5000,
"chr8", 100, 200,
"chr1", 100, 300,
"chr1", 100, 200
)
# sort by chrom and start
bed_sort(x)
# reverse sort order
bed_sort(x, reverse = TRUE)
# sort by interval size
bed_sort(x, by_size = TRUE)
# sort by decreasing interval size
bed_sort(x, by_size = TRUE, reverse = TRUE)
# sort by interval size within chrom
bed_sort(x, by_size = TRUE, by_chrom = TRUE)
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