dot-filterNetw: Filter nodes & edges for extracting networks (main) This...

In wrMisc: Analyze Experimental High-Throughput (Omics) Data

Filter nodes & edges for extracting networks (main) This function allows extracting and filtering network-data based on fixed threshold (limInt) and add sandwich-nodes (nodes inter-connecting initial nodes) out of node-based queries.

Description

Filter nodes & edges for extracting networks (main)

This function allows extracting and filtering network-data based on fixed threshold (limInt) and add sandwich-nodes (nodes inter-connecting initial nodes) out of node-based queries.

Usage

.filterNetw(
  lst,
  remOrphans = TRUE,
  reverseCheck = TRUE,
  filtCol = 2,
  callFrom = NULL,
  silent = FALSE,
  debug = FALSE
)

Arguments

lst	(list, composed of multiple matrix or data.frames ) main input (each list-element should have same number of columns)
remOrphans	(logical) remove networks consisting only of 2 connected edges
reverseCheck	(logical)
filtCol	(integer, length=1) which column of lst should be usd to filter using thresholds limInt and sandwLim
callFrom	(character) allow easier tracking of message(s) produced
silent	(logical) suppress messages
debug	(logical) display additional messages for debugging

Value

This function returns a matrix or data.frame

See Also

filterNetw and other CRAN package dedeicated to networks

Examples

ab <- 1:10  

wrMisc documentation built on Nov. 17, 2023, 5:09 p.m.