mergeMatrices: Merge Multiple Matrices

In wrMisc: Analyze Experimental High-Throughput (Omics) Data

Merge Multiple Matrices

Description

This function allows merging of multiple matrix-like objects. The matix-rownames will be used to align common elements, either be returning all common elements mode='intersect' or containg all elements mode='union' (the result may contains additional NAs).

Usage

mergeMatrices(
  ...,
  mode = "intersect",
  useColumn = 1,
  na.rm = TRUE,
  extrRowNames = FALSE,
  silent = FALSE,
  debug = FALSE,
  callFrom = NULL
)

Arguments

...	(matrix or data.frame) multiple matrix or data.frame objects may be entered
mode	(character) allows choosing restricting to all common elements (mode='intersect') or union (mode='union')
useColumn	(integer, character or list) the column(s) to consider, may be 'all' to use all, integer to select specific indexes or list of indexes or colnames for cutom-selection per matrix
na.rm	(logical) suppress NAs
extrRowNames	(logical) decide whether columns with all values different (ie no replicates or max divergency) should be excluded
silent	(logical) suppress messages
debug	(logical) additional messages for debugging
callFrom	(character) allow easier tracking of messages produced

Details

Custom column-names can be given by entering matrices like named arguments (see examples below). The choice of columns tu use may be adopted to each matrix entered, in this case the argument useColumn may be a list with matrix-names to use or a list of indexes (see examples below).

Note, that matrices may contain repeated rownames (see examples, mat3). In this case only the first of repeated rownames will be considered (and lines of repeated names ignored).

Value

This function returns a matrix containing all selected columns of the input matrices to fuse

See Also

merge, mergeMatrixList

Examples

mat1 <- matrix(11:18, ncol=2, dimnames=list(letters[3:6],LETTERS[1:2]))
mat2 <- matrix(21:28, ncol=2, dimnames=list(letters[2:5],LETTERS[3:4]))
mat3 <- matrix(31:38, ncol=2, dimnames=list(letters[c(1,3:4,3)],LETTERS[4:5]))

mergeMatrices(mat1, mat2)
mergeMatrices(mat1, mat2, mat3, mode="union", useCol=2)
## custom names for matrix-origin
mergeMatrices(m1=mat1, m2=mat2, mat3, mode="union", useCol=2)
## flexible/custom selection of columns
mergeMatrices(m1=mat1, m2=mat2, mat3, mode="union", useCol=list(1,1:2,2))

wrMisc documentation built on Sept. 11, 2024, 6:10 p.m.