summarizeCols: Summarize columns (as median,mean,min,last or other methods)

In wrMisc: Analyze Experimental High-Throughput (Omics) Data

Summarize columns (as median,mean,min,last or other methods)

Description

summarizeCols summarizes all columns of matrix (or data.frame). In case of text-columns the sorted middle (~median) will be given, unless 'maxLast', 'minLast', 'maxLast','maxAbsLast' or 'minLast' .. consider only last column of 'matr' : choose from all columns the line where (max of) last col is at min; 'medianComplete' or 'meanComplete' consideres only lines/rows where no NA occur (NA have influence other columns !)

Usage

summarizeCols(
  matr,
  meth = "median",
  silent = FALSE,
  debug = FALSE,
  callFrom = NULL
)

Arguments

matr	data.frame matrix of data to be summarized by comlumn (may do different method for text and numeric comlumns)
meth	(character) summarization method (eg 'maxLast','minLast','maxLast','maxAbsLast', 'minLast', 'medianComplete' or 'meanComplete')
silent	(logical) suppress messages
debug	(logical) additional messages for debugging
callFrom	(character) allow easier tracking of messages produced

Value

vector with summary for each column

See Also

rowMeans in colSums

Examples

t1 <- matrix(round(runif(30,1,9)), nc=3); rownames(t1) <- letters[c(1:5,3:4,6:4)]
summarizeCols(t1, me="median")
t(sapply(by(t1,rownames(t1), function(x) x), summarizeCols,me="maxLast"))
t3 <- data.frame(ref=rep(11:15,3), tx=letters[1:15],
  matrix(round(runif(30,-3,2),1), ncol=2), stringsAsFactors=FALSE)
by(t3,t3[,1], function(x) x)
t(sapply(by(t3,t3[,1], function(x) x), summarizeCols,me="maxAbsLast"))

wrMisc documentation built on Nov. 17, 2023, 5:09 p.m.