dbsnpQueryRange: retrieve snps from dbSNP using coordinate.

In xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'

retrieve snps from dbSNP using coordinate.

Description

retrieve snps from dbSNP using coordinate.

Usage

dbsnpQueryRange(
  chrom = "",
  startPos = -1,
  endPos = -1,
  genomeBuild = "GRCh38/hg38",
  track = "snp151Common"
)

Arguments

chrom	(character) name of chromesome, including chr1-chr22, chrX, chrY.
startPos	A positive integer.
endPos	A positive integer.
genomeBuild	"GRCh38/hg38" or "GRCh38/hg19". Default: "GRCh38/hg38".
track	"snp151Common", "snp150Common" or "snp147Common". Default: "snp151Common".

Value

A data.table object.

xQTLbiolinks documentation built on Sept. 15, 2023, 1:06 a.m.