xQTLdownload_sqtlExp: Download normalized PSI value of intron for a sQTL pair

In xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'

Download normalized PSI value of intron for a sQTL pair

Description

Download normalized PSI value of intron for a sQTL pair

Usage

xQTLdownload_sqtlExp(
  variantName = "",
  phenotypeId = "",
  variantType = "auto",
  tissueSiteDetail = ""
)

Arguments

variantName	(character) name of variant, dbsnp ID and variant id is supported, eg. "rs138420351" and "chr17_7796745_C_T_b38".
phenotypeId	A character string. Format like: "chr1:497299:498399:clu_54863:ENSG00000239906.1"
variantType	(character) options: "auto", "snpId" or "variantId". Default: "auto".
tissueSiteDetail	(character) details of tissues in GTEx can be listed using tissueSiteDetailGTExv8 or tissueSiteDetailGTExv7

Value

A data.table object.

Examples

# Download sQTL expression in different tissues:
xQTLdownload_sqtlExp(variantName="rs1450891501",
                     phenotypeId="chr1:497299:498399:clu_54863:ENSG00000239906.1",
                     tissueSiteDetail="Lung")

# Dowload sQTL expression using variant ID.
xQTLdownload_sqtlExp(variantName="chr1_1259424_T_C_b38",
                     phenotypeId=" chr1:1487914:1489204:clu_52051:ENSG00000160072.19",
                     tissueSiteDetail="Adipose - Subcutaneous")

xQTLbiolinks documentation built on Sept. 15, 2023, 1:06 a.m.