xQTLdownload_eqtlExp | R Documentation |
Download normalized expression for gene with a variant-gene pair
xQTLdownload_eqtlExp(
variantName = "",
gene = "",
variantType = "auto",
geneType = "auto",
tissueSiteDetail = ""
)
variantName |
(character) name of variant, dbsnp ID and variant id is supported, eg. "rs138420351" and "chr17_7796745_C_T_b38". |
gene |
(character) gene symbol or gencode id (versioned or unversioned are both supported). |
variantType |
(character) options: "auto", "snpId" or "variantId". Default: "auto". |
geneType |
(character) options: "auto","geneSymbol" or "gencodeId". Default: "auto". |
tissueSiteDetail |
(character) details of tissues in GTEx can be listed using |
A data.table object.
# Download exp with variant-gene pair in different tissues:
xQTLdownload_eqtlExp(variantName="rs1641513",gene="TP53", tissueSiteDetail="Liver")
# Download expression using variant ID and gencode ID.
xQTLdownload_eqtlExp(variantName="chr1_14677_G_A_b38",gene="ENSG00000228463.9",
tissueSiteDetail="Stomach")
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