xQTLanno_genomic: annotate all signals in GWAS / QTL dataset by genome location
In xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'
xQTLanno_genomic R Documentation
annotate all signals in GWAS / QTL dataset by genome location
Description
annotate all signals in GWAS / QTL dataset by genome location
Usage
xQTLanno_genomic(snpInfo = "", p_cutoff = 5e-08, genomeVersion = "hg38")
Arguments
snpInfo
A data.table/data.frame with three columns: chromosome, position, and P-value.
p_cutoff
Cutoff of p-values of significant variants that will be annotated
genomeVersion
"hg38" (default) or "hg19". Note: hg19 will be converted to hg38 automatically.
Value
A data.table object of variants' genomics distribution
xQTLbiolinks documentation built on Sept. 15, 2023, 1:06 a.m.
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| xQTLanno_genomic | R Documentation |
annotate all signals in GWAS / QTL dataset by genome location
Description
annotate all signals in GWAS / QTL dataset by genome location
Usage
xQTLanno_genomic(snpInfo = "", p_cutoff = 5e-08, genomeVersion = "hg38")
Arguments
snpInfo |
A data.table/data.frame with three columns: chromosome, position, and P-value. |
p_cutoff |
Cutoff of p-values of significant variants that will be annotated |
genomeVersion |
"hg38" (default) or "hg19". Note: hg19 will be converted to hg38 automatically. |
Value
A data.table object of variants' genomics distribution
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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