xhmmScripts: XHMM R scripts
Version 1.1

R scripts for plotting and assessing XHMM whole-exome-sequencing-based CNV calls. XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally). This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.

Package details

AuthorMenachem Fromer
Date of publication2014-06-15 07:38:05
MaintainerMenachem Fromer <fromer@broadinstitute.org>
LicenseGPL-2
Version1.1
URL http://atgu.mgh.harvard.edu/xhmm
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("xhmmScripts")

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xhmmScripts documentation built on May 29, 2017, 3:08 p.m.