xhmmScripts: XHMM R scripts

R scripts for plotting and assessing XHMM whole-exome-sequencing-based CNV calls. XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally). This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.

Package details

AuthorMenachem Fromer
MaintainerMenachem Fromer <fromer@broadinstitute.org>
URL http://atgu.mgh.harvard.edu/xhmm
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

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xhmmScripts documentation built on May 2, 2019, 1:01 a.m.