Make a series of plots documenting the output of XHMM.

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Description

Make a series of plots documenting the output of XHMM.

Usage

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XHMM_plots(PLOT_PATH, JOB_PREFICES, JOB_TARGETS_TO_GENES = NULL,
SAMPLE_FEATURES = NULL, SQ_THRESH = 60, NUM_ADD_TARGS = 2,
PLOT_READ_DEPTHS = TRUE, PLOT_PC_CORRS = TRUE,
PLOT_ALL_CNVS = TRUE, USE_XCNV_TO_PLOT = NULL,
INCLUDE_PEDIGREE_SAMPLES = NULL, PLOT_ONLY_PNG = TRUE, LIMIT_MEMORY = FALSE)

Arguments

PLOT_PATH
JOB_PREFICES
JOB_TARGETS_TO_GENES
SAMPLE_FEATURES
SQ_THRESH
NUM_ADD_TARGS
PLOT_READ_DEPTHS
PLOT_PC_CORRS
PLOT_ALL_CNVS
USE_XCNV_TO_PLOT
INCLUDE_PEDIGREE_SAMPLES
PLOT_ONLY_PNG
LIMIT_MEMORY

Examples

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## Not run: XHMM_plots(PLOT_PATH, JOB_PREFICES, JOB_TARGETS_TO_GENES, SAMPLE_FEATURES)

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