XHMM_plots: Make a series of plots documenting the output of XHMM.
In xhmmScripts: XHMM R scripts

Make a series of plots documenting the output of XHMM.

XHMM_plots(PLOT_PATH, JOB_PREFICES, JOB_TARGETS_TO_GENES = NULL,
SAMPLE_FEATURES = NULL, SQ_THRESH = 60, NUM_ADD_TARGS = 2,
PLOT_READ_DEPTHS = TRUE, PLOT_PC_CORRS = TRUE,
PLOT_ALL_CNVS = TRUE, USE_XCNV_TO_PLOT = NULL,
INCLUDE_PEDIGREE_SAMPLES = NULL, PLOT_ONLY_PNG = TRUE, LIMIT_MEMORY = FALSE)

`PLOT_PATH`
`JOB_PREFICES`
`JOB_TARGETS_TO_GENES`
`SAMPLE_FEATURES`
`SQ_THRESH`
`NUM_ADD_TARGS`
`PLOT_READ_DEPTHS`
`PLOT_PC_CORRS`
`PLOT_ALL_CNVS`
`USE_XCNV_TO_PLOT`
`INCLUDE_PEDIGREE_SAMPLES`
`PLOT_ONLY_PNG`
`LIMIT_MEMORY`