Description Usage Arguments Examples
Plot the XHMM CNV spanning the input region.
1 2 3 4 5 6 7 8 9 10 | plot_XHMM_region(BASE_OUTPUT_NAME, xhmm_data, allTargsToGenes,
binarySampleFeatures, SQ_THRESH, chrom, start = NULL, stop = NULL,
PLOT_ONLY_PNG = TRUE, PLOT_LINE_SEGMENTS = TRUE, DEFAULT_WIDTH = 14,
DEFAULT_HEIGHT = 7,
UPDATE_FIG_HEIGHT_FOR_MARGINS = TRUE, GENE_NAME_cex = 0.8,
PLOT_PIPELINE_TRANSITIONS = TRUE, DIFFERENTIATE_SAMPLE_GROUPS = NULL,
COLOR_DIFFERENTIAL_TARGETS = TRUE, MARK_SAMPLES = NULL,
MARK_SAMPLES_COLORS = DEFAULT_MARK_SAMPLES_COLORS,
MARK_SAMPLES_ONLY_IN_CALLS = FALSE, EXCLUDE_SAMPLES = NULL,
MARK_INTERVALS = NULL, APPEND_REGION_NAME = TRUE)
|
BASE_OUTPUT_NAME |
|
xhmm_data |
|
allTargsToGenes |
|
binarySampleFeatures |
|
SQ_THRESH |
|
chrom |
|
start |
|
stop |
|
PLOT_ONLY_PNG |
|
PLOT_LINE_SEGMENTS |
|
DEFAULT_WIDTH |
|
DEFAULT_HEIGHT |
|
UPDATE_FIG_HEIGHT_FOR_MARGINS |
|
GENE_NAME_cex |
|
PLOT_PIPELINE_TRANSITIONS |
|
DIFFERENTIATE_SAMPLE_GROUPS |
|
COLOR_DIFFERENTIAL_TARGETS |
|
MARK_SAMPLES |
|
MARK_SAMPLES_COLORS |
|
MARK_SAMPLES_ONLY_IN_CALLS |
|
EXCLUDE_SAMPLES |
|
MARK_INTERVALS |
|
APPEND_REGION_NAME |
1 2 3 | ## Not run: plot_XHMM_region("./out", xhmm_data, allTargsToGenes,
binarySampleFeatures, SQ_THRESH, "X", 10000, 20000)
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.