xhmmScripts-package: Examine and plot XHMM whole-exome-sequencing-based CNV calls

In xhmmScripts: XHMM R scripts

Description

Examine and plot XHMM whole-exome-sequencing-based CNV calls.

XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally).

This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.

Details

Package:	xhmmScripts
Type:	Package
Version:	1.0
Date:	2014-05-22
License:	GPL-2

A typical use case is outlined here:
https://bitbucket.org/statgen/xhmm/src/master/sources/scripts/example_make_XHMM_plots.R

Author(s)

Menachem Fromer

Maintainer: Menachem Fromer <[e-mail]>

References

http://atgu.mgh.harvard.edu/xhmm/citations.shtml

xhmmScripts documentation built on May 2, 2019, 1:01 a.m.