Description Details Author(s) References
Examine and plot XHMM whole-exome-sequencing-based CNV calls.
XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally).
This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.
Package: | xhmmScripts |
Type: | Package |
Version: | 1.0 |
Date: | 2014-05-22 |
License: | GPL-2 |
A typical use case is outlined here:
https://bitbucket.org/statgen/xhmm/src/master/sources/scripts/example_make_XHMM_plots.R
Menachem Fromer
Maintainer: Menachem Fromer <fromer@broadinstitute.org>
http://atgu.mgh.harvard.edu/xhmm/citations.shtml
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