Examine and plot XHMM whole-exome-sequencing-based CNV calls
Examine and plot XHMM whole-exome-sequencing-based CNV calls.
XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally).
This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.
A typical use case is outlined here:
Maintainer: Menachem Fromer <email@example.com>