xhmmScripts-package: Examine and plot XHMM whole-exome-sequencing-based CNV calls

Description Details Author(s) References

Description

Examine and plot XHMM whole-exome-sequencing-based CNV calls.

XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally).

This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.

Details

Package: xhmmScripts
Type: Package
Version: 1.0
Date: 2014-05-22
License: GPL-2

A typical use case is outlined here:
https://bitbucket.org/statgen/xhmm/src/master/sources/scripts/example_make_XHMM_plots.R

Author(s)

Menachem Fromer

Maintainer: Menachem Fromer <fromer@broadinstitute.org>

References

http://atgu.mgh.harvard.edu/xhmm/citations.shtml



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