Files in Accio/BioQC
Detect tissue heterogeneity in expression profiles with gene sets

.Rbuildignore
.gitignore
.travis.yml
BioQC.Rproj
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/AllClasses.R R/AllMethods.R R/entropy.R R/gini.R R/matchGenes.R R/readGmt.R R/utils.R R/wmwTest.R README.md coverage.r
coverage.txt
inst/CITATION
inst/Rscript/bioqc.Rscript
inst/extdata/exp.tissuemark.affy.roche.symbols.gmt
inst/extdata/test.gct
inst/extdata/test.gmt
man/BaseIndexList-class.Rd man/GmtList-class.Rd man/GmtList.Rd man/IndexList-class.Rd man/IndexList.Rd man/SignedGenesets-class.Rd man/SignedGenesets.Rd man/SignedIndexList-class.Rd man/SignedIndexList.Rd man/absLog10p.Rd man/as.gmtlist.Rd man/entropy.Rd man/filterPmat.Rd man/gini.Rd man/gmtlist2signedGenesets.Rd man/matchGenes.Rd man/offset-BaseIndexList-method.Rd man/offset-set.Rd man/readGmt.Rd man/readSignedGmt.Rd man/simplifyMatrix.Rd man/sub-.GmtList.Rd man/sub-sub-.GmtList.Rd man/valTypes.Rd man/wmwTest.Rd man/wmwTestInR.Rd
src/Makevars
src/gini.c
src/init.c
src/init.h
src/read_gmt.cpp
src/read_gmt.h
src/stat_rank.c
src/stat_rank.h
src/wmw_test.c
tests/testthat.R tests/testthat/test-gini.R tests/testthat/test-indexlist.R tests/testthat/test-matchGene.R tests/testthat/test-out-of-range.R tests/testthat/test-readgmt.R tests/testthat/test-wmwTest.R
vignettes/.gitignore
vignettes/Makefile-forJekyll
vignettes/bioqc-efficiency.Rmd vignettes/bioqc-efficiency.md vignettes/bioqc-signedGenesets.Rmd vignettes/bioqc-signedGenesets.md vignettes/bioqc.Rmd vignettes/bioqc.md
vignettes/simulation-benchmark.RData
vignettes/wmw-speedup.svg
Accio/BioQC documentation built on April 17, 2019, 2:58 p.m.