as.GmtList: Convert a list of gene symbols into a gmtlist

In Accio/BioQC: Detect tissue heterogeneity in expression profiles with gene sets

Description

Convert a list of gene symbols into a gmtlist

Usage

as.GmtList(list, description = NULL, uniqGenes = TRUE, namespace = NULL)

Arguments

list	A named list with character vectors of genes. Names will become names of gene sets; character vectors will become genes
description	Character, description of gene-sets. The value will be expanded to the same length of the list.
uniqGenes	Logical, whether redundant genes should be made unique?
namespace	Character or NULL, namespace of the gene-set

Examples

testVec <- list(GeneSet1=c("AKT1", "AKT2"),
               GeneSet2=c("MAPK1", "MAPK3"),
               GeneSet3=NULL)
testVecGmtlist <- as.GmtList(testVec)

Accio/BioQC documentation built on Jan. 27, 2022, 10:45 p.m.