sub-.GmtList: Subsetting GmtList object into another GmtList object

In Accio/BioQC: Detect tissue heterogeneity in expression profiles with gene sets

Description

Subsetting GmtList object into another GmtList object

Usage

## S3 method for class 'GmtList'
x[i, drop = FALSE]

Arguments

x	A GmtList object
i	Index to subset
drop	In case only one element remains, should a list representing the single geneset returned? Default: FALSE

Examples

myGmtList <- GmtList(list(gs1=letters[1:3], gs2=letters[3:4], gs3=letters[4:5]))
myGmtList[1:2]
myGmtList[1] ## default behaviour: not dropping
myGmtList[1,drop=TRUE] ## force dropping

Accio/BioQC documentation built on Jan. 27, 2022, 10:45 p.m.