CandidateInteractionsToGInteractions: CandidateInteractionsToGInteractions transform Chicdiff...

In AdrijaK/omicsWrappers: wrapper functions for integrating and visualising ChIPseq, ATACseq, Hi-C, pcHi-C and RNAseq data

Description

CandidateInteractionsToGInteractions transform Chicdiff CandidateInteractions (data frame) To GInteractions object using rmap

Usage

CandidateInteractionsToGInteractions(
  candidateInteractionsDataFrame,
  pathToRmap
)

Arguments

chicDiffResultsDataFrame	("data.table" or "data.frame") Results dataset from Chicdiff pipeline
path	to rmap file that was used upstream in chicago/chicdiff. Rmap file should have four columns: V1:V4 ("chr", "start", "end", "RF_n")

Value

GInteractions object with leftover columns forming mcols

AdrijaK/omicsWrappers documentation built on July 22, 2020, 2:11 p.m.