findMouseGenesFromGO: findMouseGenesFromGO find mouse genes based on one or many GO...

In AdrijaK/omicsWrappers: wrapper functions for integrating and visualising ChIPseq, ATACseq, Hi-C, pcHi-C and RNAseq data

Description

findMouseGenesFromGO find mouse genes based on one or many GO terms. This function uses AnnotationDbi library to query org.Mm.eg.db for genes associated with GO term IDs of interest

Usage

findMouseGenesFromGO(GOstringOrVector)

Arguments

GOstringOrVector

(string or vector of strings with GO terms of interest)

Value

data.frame object containing columns: "GO": queried GO term ID ('GO:0042800') "EVIDENCE": evidence level for ontology term (see http://geneontology.org/docs/guide-go-evidence-codes/) "ONTOLOGY": 'MF' (molecular function), 'BP'(Biological pathway) , 'CC' (cellular component) "ENSEMBL": ENSEMBL gene ID (e.g., 'ENSMUSG00000028053') "SYMBOL": gene symbol (e.g., 'Ash1l') "ENZYME": KEGG enzyme name (e.g., 2.1.1.43) If the GO term doesnt contain any genes, all columns except "GO" contain <NA>s

Examples

findMouseGenesFromGO("GO:0070734")

AdrijaK/omicsWrappers documentation built on July 22, 2020, 2:11 p.m.